PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g048520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 223aa    MW: 25502.7 Da    PI: 7.5405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g048520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000225577123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C + F++   L  H+++H
  Csa06g048520.1 55 YICSFCRREFRSAQALGGHMNVH 77
                    89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.85E-65281No hitNo description
Gene3DG3DSA:3.30.160.609.3E-45380IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.3E-65578IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.975582IPR007087Zinc finger, C2H2
SMARTSM003550.00985577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MKRTHLASFS NRSITREEEE EEEEEEDTDG DHNRVIMNHY KSYETGLIPW PPKNYICSFC  60
RREFRSAQAL GGHMNVHRRD RAKLRQIPSW LFEPQHHIPI ANPNPNIRSS SSASTTPAPL  120
EPSLTNQRSK KTPFPSARFD LLDSTTTRYG GLMVDREKNK SNVCSRELKN GVMIDACNSV  180
RCEISRGDLM NQKDDQLMGL ELGMSLRNPN QVLDLELRLG YL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-125077229superman protein
2l1o_A3e-125077229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g048520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935860.0AB493586.1 Arabidopsis thaliana At2g42410 gene for hypothetical protein, partial cds, clone: RAAt2g42410.
GenBankAC0059560.0AC005956.4 Arabidopsis thaliana chromosome 2 clone MHK10 map EG05C12, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517767.11e-167PREDICTED: transcriptional regulator SUPERMAN-like
SwissprotQ9SLB81e-128ZFP11_ARATH; Zinc finger protein 11
TrEMBLD7LI581e-127D7LI58_ARALL; Predicted protein
STRINGXP_010517767.11e-166(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-116zinc finger protein 11