PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g048540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 254aa    MW: 28509.4 Da    PI: 6.709
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g048540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.32.9e-3971071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC k+Cv+apyf+ eq +++fa++h++FGasn +kll++lp e+r++a+++++yeA+ar +dP+yG+v++i++lqqq+ +l+++l
  Csa06g048540.1   7 PCGACKFLRRKCIKECVFAPYFCYEQgASHFAAIHQVFGASNASKLLSHLPVEDRREAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQL 101
                     7*************************89******************************************************************* PP

          DUF260  95 allkee 100
                     + lk++
  Csa06g048540.1 102 EILKQQ 107
                     **9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.5266108IPR004883Lateral organ boundaries, LOB
PfamPF031958.8E-377105IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:1.20.58.4306.9E-484181IPR023220Type IV secretion system, VirB5-domain
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCIK ECVFAPYFCY EQGASHFAAI HQVFGASNAS KLLSHLPVED  60
RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ LEILKQQATQ SMMARDSQSI  120
ENSNCYRDYM PQHLQEPQDL HLRHHHHHHT TSNYQNINGS LETERYSDLK NIMTTSCYHQ  180
NQTGTRSFIG AGGDTTAASY YYNSSSGCSE EINSTIGEFS KYSELDQHLN TFNQHLHGGG  240
GNDLLSASFE YTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3431027105LOB family transfactor Ramosa2.1
5ly0_B3e-3431027105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g048540.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738481e-165AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517770.10.0PREDICTED: LOB domain-containing protein 17-like
SwissprotQ9SLB61e-124LBD17_ARATH; LOB domain-containing protein 17
TrEMBLD7LI621e-126D7LI62_ARALL; Uncharacterized protein
STRINGXP_010517770.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.11e-109LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]