PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g048810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 278aa    MW: 31837.2 Da    PI: 9.0856
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g048810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.7e-3253106255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtp+LH +Fv+av++LGG+++AtPk +l++m+vkgL+++hvkSHLQ+YR+
  Csa06g048810.1  53 PRLRWTPDLHLSFVRAVQRLGGPHRATPKLVLQMMNVKGLSIAHVKSHLQMYRS 106
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.70349109IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2949107IPR009057Homeodomain-like
SuperFamilySSF466892.15E-1453107IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-2353108IPR006447Myb domain, plants
PfamPF002492.5E-954105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAWTSPPGKC YTYLDLNREE TVEKNNEEES SVEDEDQVTS SNNVRQYVRS NMPRLRWTPD  60
LHLSFVRAVQ RLGGPHRATP KLVLQMMNVK GLSIAHVKSH LQMYRSKKLE PSLSRHEFGA  120
FMSGQRSYLM NMIDSRCIPY GGDLRHAYNS KTVPSRVLNQ DAVITNLEGN FLMRPSSWLS  180
GLCTNNQDSI KNKTLPLLEI RKTINEKRVR NEEVLSVKRL KSISGDGIQL LEYGNCRQKP  240
TDDINTMLTL SLFSTSSGDP VSWDEYLARI WIRLDSDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-1854108458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-1854108458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-1854108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1854108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1854108357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1854108357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-1854108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-1854108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-1854108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-1854108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-1854108458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-1854108458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g048810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0746400.0AY074640.1 Arabidopsis thaliana F14N22.7/F14N22.7 mRNA, complete cds.
GenBankAY0789380.0AY078938.1 Arabidopsis thaliana At2g45350/F14N22.7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517802.10.0PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
TrEMBLD7LIV01e-148D7LIV0_ARALL; Myb family transcription factor
STRINGXP_010517802.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.11e-132G2-like family protein