PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g050760.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 620aa    MW: 69443.7 Da    PI: 9.4754
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g050760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.6e-123587248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     ++W t+E++ll++avk++G g+W+++a  +          ++++ck+++++++
   Csa06g050760.1 35 QAWGTWEELLLACAVKRHGYGDWDSVATDVRsrsslsDLVSANHCKHKYRDLK 87
                     68*****************************99888855699********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.1562987IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.8E-52994IPR009057Homeodomain-like
SuperFamilySSF466891.3E-63091IPR009057Homeodomain-like
SMARTSM007170.00173389IPR001005SANT/Myb domain
PfamPF002496.3E-113587IPR001005SANT/Myb domain
CDDcd001672.25E-63687No hitNo description
SuperFamilySSF473701.3E-16264377IPR001487Bromodomain
SMARTSM002972.5E-19268377IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.0E-16271401IPR001487Bromodomain
CDDcd043691.50E-14282372No hitNo description
PfamPF004391.3E-10282357IPR001487Bromodomain
PROSITE profilePS5001412.223287350IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MNVDNTNNND YICTNDCIEE DDDNNTNNKR SQTQQAWGTW EELLLACAVK RHGYGDWDSV  60
ATDVRSRSSL SDLVSANHCK HKYRDLKRRF HEKEKTDAAA TAEDEEEKVG NNNISWLEQL  120
RNLRVAELRR EVERYDVSIL SLQLKVKKLE EEREEEKPDL EEEMKTERSE NDGSETEHRE  180
KAEESDRDNG SMNESNSTET VGEDERVGGN ETRDGDNNNP DPVSKDTAEE ERSVSRGSEA  240
SHSDELGESG TSERKWKRKR RKHGGSDEIR SGESKSQPLI GLLDLIRSHP RGSLFERRLR  300
SQEAKDYKSM VKQHLDIETI QRKLKQGCYD SSTLTFYRDL QLLFTNVIVF FPLSSAESMA  360
AHELRAVVSQ ELRKETGEYG PTLIKRKVSA MDSGQADAET SDSSLSREKS SAPFVVCKRR  420
SSVSTKTSPS SSSFSQKEET KEETLSEEKE NIVTGVRSSR RANKVVAAAA AISNITKKGK  480
SKNKQKQTES KTNSSNDNST KQETGKTEKK MISSDKKKSV ADFLKRLKNS PQKESKDLNK  540
SSGGGKKDSK TKPRELRSSS VGKKKAGVEI SPVKRAPGRP QKKTIEAGAT ATASAMGKRG  600
RDTGSTGKDN KQPKKRIRM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253261RKWKRKRRK
2256261KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g050760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1207070.0AY120707.1 Arabidopsis thaliana unknown protein (At2g44430) mRNA, complete cds.
GenBankBT0096640.0BT009664.1 Arabidopsis thaliana At2g44430 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518041.10.0PREDICTED: RNA-binding protein 25-like
TrEMBLO648770.0O64877_ARATH; At2g44430
STRINGXP_010518041.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.10.0DNA-binding bromodomain-containing protein