PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g051550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 648aa    MW: 70966.4 Da    PI: 5.9377
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g051550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.24.6e-952726462374
            GRAS   2 velLlecAeavss..gdle......laqalLarlsel..aspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                     +e+L+++Ae + +  + ++      laq +Larl+++  +s++   +p+qR+a++++eAL + +++      ++ +p   +++n + ++aa++ f
  Csa06g051550.1 272 IEQLFNAAELIGTngN-NNngdhtiLAQGILARLNHHlnSSNHNhkSPFQRAASHIAEALLSLIHN-----DSSSSPPLITPENLILRIAAYRSF 360
                     6788888888876431.223455579**********98644443346******************9.....3444555556678*********** PP

            GRAS  85 sevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLas.....RpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                     se+sP+l+f ++taNq Ile+ + +  +r+HiiDfd+++G+QW +L+q+Las     R++ + sl++T++++p s+  ++ el+ t+e+L+ fA 
  Csa06g051550.1 361 SETSPFLQFVNFTANQSILESCNDSgfDRIHIIDFDVGYGGQWSSLMQELASggggrRRNRASSLKLTVFAPPPSTvsDEFELRFTQENLKTFAG 455
                     **********************99888************************744443557899*********9988899**************** PP

            GRAS 171 elgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                     e++vpfe+++l  + l +  ++ L++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F + +++al+y
  Csa06g051550.1 456 EVKVPFEIELLSIELLLNPAYWPLSLRSseKEAIAVNLPINSVVSG--------YLPLILRFLKQISPNVVVCSDRGCDRNDAPFPNAVIHALQY 542
                     ***********88888888999998887779********9655554........5677************************************* PP

            GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                     +++l++sl+a+   +++++++vEr++++++i++++++++++     e+   Wr+ ++++GF+p++ls++a++qa++ll++++++g++ve+++ sl
  Csa06g051550.1 543 HTTLLESLDAN---QNQDDSSVERFWVQPSIEKLLMKRQRW----IERSPPWRSLFTQCGFSPASLSQTAEAQAECLLQRHPVRGFHVEKRQSSL 630
                     ***********...89************************9....89999********************************************* PP

            GRAS 359 vlgWkdrpLvsvSaWr 374
                     v++W++++Lv+vSaW+
  Csa06g051550.1 631 VMCWQRKELVTVSAWK 646
                     ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.454252626IPR005202Transcription factor GRAS
PfamPF035141.6E-92272646IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MPLSFERFQG EGVFCFSSSS SSFYPDSHKI WLNNQEDKTG VREAKQEEDL GYVVGSFLPE  60
PTSVLDALRS PSPLASHSST TTTLSSSHGG GTTATAVTPG DNKCSQMGLD DLDGVLSASS  120
PGQEQSILRL IMDPGSAFGV FDPGFGFGSA SSGPVTDDNS NPLCSFPFQE VTNPTEALIN  180
PTTSHCLFSS NPPLSPPAKR FNSGSHHHQP VFPFSDPDPV HDPVRRQHQF QFPFQFHQQQ  240
IPSPSSSSAA VAMVPVPVPS PGMAGDDQSV IIEQLFNAAE LIGTNGNNNN GDHTILAQGI  300
LARLNHHLNS SNHNHKSPFQ RAASHIAEAL LSLIHNDSSS SPPLITPENL ILRIAAYRSF  360
SETSPFLQFV NFTANQSILE SCNDSGFDRI HIIDFDVGYG GQWSSLMQEL ASGGGGRRRN  420
RASSLKLTVF APPPSTVSDE FELRFTQENL KTFAGEVKVP FEIELLSIEL LLNPAYWPLS  480
LRSSEKEAIA VNLPINSVVS GYLPLILRFL KQISPNVVVC SDRGCDRNDA PFPNAVIHAL  540
QYHTTLLESL DANQNQDDSS VERFWVQPSI EKLLMKRQRW IERSPPWRSL FTQCGFSPAS  600
LSQTAEAQAE CLLQRHPVRG FHVEKRQSSL VMCWQRKELV TVSAWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2829964620375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g051550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546050.0AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518129.10.0PREDICTED: scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A384KUR00.0A0A384KUR0_ARATH; LOM1
TrEMBLB7ZWR80.0B7ZWR8_ARATH; At2g45160
STRINGXP_010518129.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]