PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g051790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 109aa    MW: 12178.7 Da    PI: 5.0146
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g051790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26027.68.4e-0923567100
          DUF260  67 arardPvyGavgvilklqqqleqlkaelallkee 100
                     ar+rdPvyG+vg++++lq+q+++l+aela+++++
  Csa06g051790.1   2 ARLRDPVYGSVGHLFSLQHQVMNLQAELAHVQAR 35 
                     79***************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031952.4E-6233IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MARLRDPVYG SVGHLFSLQH QVMNLQAELA HVQARLSTFQ HFPLQSPQLP SIDLAHNNVY  60
PMEQPSNLDS AWEEEHLPQG GIEDGEFQEL AMQYISRYLP AVKLPAGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g051790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738561e-89AB473856.1 Arabidopsis thaliana ASL23 mRNA for ASYMMETRIC LEAVES2-like 23 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413059.12e-74PREDICTED: LOB domain-containing protein 19-like
SwissprotO221329e-55LBD19_ARATH; LOB domain-containing protein 19
TrEMBLR0HYN62e-53R0HYN6_9BRAS; Uncharacterized protein
STRINGXP_010413059.16e-74(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.14e-57LOB domain-containing protein 19