PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g052050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 28676.4 Da    PI: 8.8597
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g052050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.1e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtfskRrng++KKA+ELSvLCdaeva+iifss+gklye+ 
  Csa06g052050.1  9 KRIENTINRQVTFSKRRNGLMKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                    79**********************************************95 PP
2K-box996.7e-3379172799
           K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ + e++++s++qe++kLk+++e+L r++R+llGedL+++ +keLq Le+qLe +l+  R++K+++++e++e+l+kke++l ++nk+L++k+e
  Csa06g052050.1  79 NNnKPEETTQSWTQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEGALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKMKFE 172
                     44478999***********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.207161IPR002100Transcription factor, MADS-box
SMARTSM004327.6E-42160IPR002100Transcription factor, MADS-box
CDDcd002656.22E-43272No hitNo description
SuperFamilySSF554551.83E-32281IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.5E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-323859IPR002100Transcription factor, MADS-box
PfamPF014865.3E-2984171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.26987177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRGRVEMKR IENTINRQVT FSKRRNGLMK KAYELSVLCD AEVALIIFSS RGKLYEFGSV  60
GIARTIQRYN RCYNCSLGNN NKPEETTQSW TQEVTKLKSK YESLVRTNRN LLGEDLGEMG  120
VKELQALERQ LEGALTATRQ RKTQVMMEEM EDLRKKERQL GDINKQLKMK FESEGHAFKT  180
FQDLWANSAA SVGGVTNNSE FPVESSHPNS VDCNTEPFLQ IGFQQHYYVG EGSSVTKSNV  240
PGETNFVHGW VL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21169169MEF2C
5f28_B3e-21169169MEF2C
5f28_C3e-21169169MEF2C
5f28_D3e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g052050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHAGL6A0.0M55554.1 Arabidopsis thaliana transcription factor (AGL6) mRNA, complete cds.
GenBankDQ4466240.0DQ446624.1 Arabidopsis thaliana clone pENTR221-At2g45650 MADS-box protein (At2g45650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518186.10.0PREDICTED: agamous-like MADS-box protein AGL6
SwissprotP293861e-171AGL6_ARATH; Agamous-like MADS-box protein AGL6
TrEMBLR0HR201e-169R0HR20_9BRAS; Uncharacterized protein
STRINGXP_010518186.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-173AGAMOUS-like 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Dreni L,Zhang D
    Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes.
    J. Exp. Bot., 2016. 67(6): p. 1625-38
    [PMID:26956504]