PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g052800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 288aa    MW: 32331 Da    PI: 4.8368
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g052800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-18102152256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrdps+   r+r +lg+f taeeAa  +++a+ +l+g+
  Csa06g052800.1 102 KYRGVRQRP-WGKYAAEIRDPST---RTRLWLGTFATAEEAAIGYDKAAIRLKGH 152
                     8********.**********976...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-20102159IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-29102158IPR001471AP2/ERF domain
PfamPF008474.3E-11102152IPR001471AP2/ERF domain
SMARTSM003803.9E-35102165IPR001471AP2/ERF domain
PROSITE profilePS5103221.68102159IPR001471AP2/ERF domain
CDDcd000182.63E-31102158No hitNo description
PRINTSPR003675.3E-10103114IPR001471AP2/ERF domain
PRINTSPR003675.3E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKSRERKVKY AVHRKITSLP FNGFPKTVKI IVTDPCATDS SSDDEEYDNK SLPPRVKRFV  60
EEIRFCNDDD DDGGAKPERK VKSKSETAAN VGDLVVKPTV VKYRGVRQRP WGKYAAEIRD  120
PSTRTRLWLG TFATAEEAAI GYDKAAIRLK GHNAQTNFLT PPPPPPTPVI DLETVSGCDS  180
ARESQISSSL CSPTSVLRFG HNEETEYRTE PMKQEEALSS DPFFLPDLFR SGDCFWDSKF  240
TPDPLFLLDE THDNNNNTLS ESFPLGVIGD FSSWDVDEFF QDHLLDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20103158359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20103158662ATERF1
3gcc_A2e-20103158662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g052800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518301.10.0PREDICTED: ethylene-responsive transcription factor CRF5
SwissprotO823391e-145CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLR0FY071e-158R0FY07_9BRAS; Uncharacterized protein
STRINGXP_010518301.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.11e-140cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]