PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g053600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 1036aa    MW: 115657 Da    PI: 6.9328
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g053600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.12.1e-42151228178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqve+Ceadls++k+yhrrhkvCe+hska++++v g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Csa06g053600.1 151 ACQVENCEADLSKVKDYHRRHKVCEMHSKATSAIVGGIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 228
                     5**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.1E-34146213IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.633149226IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-39151230IPR004333Transcription factor, SBP-box
PfamPF031108.4E-31152225IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1036 aa     Download sequence    Send to blast
MEARIEGEPQ QHFYGFRAVD LRSVGKKSVE WDLNDWKWDG DLFVATHLNP PGGVATETTG  60
RQFFPLGNSS NSSSSCSDEG NNSEFMVRST REVEKKRRAV AIEGDINGGK GLTLKLGDNG  120
CDFNGEREGS CAAKKTKFGG GAAGGVTNRA ACQVENCEAD LSKVKDYHRR HKVCEMHSKA  180
TSAIVGGIMQ RFCQQCSRFH VLQEFDEGKR SCRRRLAGHN KRRRKTNPEP GANGNPSDDQ  240
SSNYLLISLL KILSNMHTTR SDLTGDQDLM SHLLKSLVSH AGEQLGKNLV KLLLQGGSQG  300
SLNIGNSGLL AIEGAPQEDS KQLSVNVPEI PRQELYANGT ATENRSEKQV KMNDFDLNDI  360
YIDSDDTDIE RSPPPTNPAT SSLDYPSWIH QSSPPQTSRN SDSASDQSPS SSSEDAQMRT  420
GRIVFKLFGK EPNDFPVVLR GQILDWLSHS PTDMESYIRP GCIVLTIYLR QAETAWEELS  480
DDLGFSLRKL LDLSDDPLWT TGWIYVRVQN QLAFVYNAMK FDSLSKTLIL LHLFQVGIKA  540
WKTSRDSTGF TPEDYARLRG HFSYIHLIQR KINKKSAXLL LLQREKLSLQ LKASISVDVA  600
QEGKYLIQET AHEDDDLKEN NGSVECVNFS CDMPITSGRG FMEIEDQGLS SSFFPFLVVE  660
DDDVCSEIRI LETTLEFTGT HSAKEAMDFI HEIGWLLHRS KLGESDPNPD VFPLIRFQWL  720
IEFSVDREWC AVIRKLLNMF FDGAVGDFSS SSNATLSELC LLHRAVGIKA WKTSRDSTGF  780
TPEDYARLRG HFSYIHLIQR KINKKSATED HVVVNIPVSF ADREQKEPKS GPVTSALEIT  840
QINQLPCKLC DHKLVYGTAR RSVAYRPAML SMVAIAAVCV CVALLFKSCP EVGIKAWKTS  900
RDSTGFTPED YARLRGHFSY IHLIQRKINK KSATEDHVVV NIPVSFADRE QKEPKSGPVT  960
SALEITQINQ LPCKLCDHKL VYGTARRSVA YRPAMLSMVA IAAVCVCVAL LFKSCPEVLY  1020
VFQPFRWELL DYGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-311522251184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g053600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8159480.0KC815948.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 1 (SPL1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507933.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A1J3IQZ60.0A0A1J3IQZ6_NOCCA; Squamosa promoter-binding-like protein 1
STRINGCagra.16630s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]