PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g053800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 357aa    MW: 39992.1 Da    PI: 7.1523
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g053800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.42.9e-33189245258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp++v++tYeg+H+h
  Csa06g053800.1 189 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTH 245
                     8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381303.3E-1121356IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.808.7E-34173247IPR003657WRKY domain
SuperFamilySSF1182901.83E-28180246IPR003657WRKY domain
PROSITE profilePS5081130.963183248IPR003657WRKY domain
SMARTSM007741.0E-38188247IPR003657WRKY domain
PfamPF031068.4E-26189245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEFTDFSKTS FYYPSSQGVW DFGDLAAAER NSLGFMELLG SQPHHHHHHH DFATTTTVSP  60
HSLLIETPQT QTQTQLSTKL SSPVSTILEA PPPPDKAASK VESFCSDQFS IHPPATPNSS  120
SISSASSEAV NEEKPKREDN QVEEEEDVQE KSHPHTKKQL KAKKNNNQKK RQREARVAFM  180
TKSEVDHLED GYRWRKYGQK AVKNSPFPRS YYRCTTASCN VKKRVERSFR DPSTVVTTYE  240
GQHTHISPLT SRPISTGAGF YGSSGAASNL GNGCFGFPIE SSTLISPQFQ QLVHYHQQQQ  300
QQQLLSCFGG VCEYLNNTHA NEFGDDDDRV KRSRGLVNKD NGLLQDVVPY HMLKED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27178248777Probable WRKY transcription factor 4
2lex_A2e-27178248777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g053800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0846580.0AY084658.1 Arabidopsis thaliana clone 114256 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518421.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229001e-168WRK23_ARATH; WRKY transcription factor 23
TrEMBLR0HQZ60.0R0HQZ6_9BRAS; Uncharacterized protein
STRINGXP_010518421.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-132WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]