PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g054370.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 398aa    MW: 42091.9 Da    PI: 9.1877
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g054370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-122042527
                    --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                    +C+f+++tGtCk+G++CkF+H++
  Csa06g054370.1 20 PCQFYLKTGTCKFGASCKFHHPK 42
                    7********************96 PP
2zf-CCCH36.58.3e-126488327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    + +C+++++tG+Ck+G +CkF+H++
  Csa06g054370.1 64 ENECSYYLKTGQCKFGITCKFHHPQ 88
                    678********************97 PP
3zf-CCCH38.12.6e-12219245127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++tG Ck+G +CkF+H++
  Csa06g054370.1 219 PGEPECQYYLKTGDCKFGTSCKFHHPR 245
                     5799*********************96 PP
4zf-CCCH33.28.6e-11266290226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +  +C f+ ++G+Ck+G++CkF H+
  Csa06g054370.1 266 GVQRCTFYVQNGFCKFGSKCKFDHP 290
                     6779********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.4E-51742IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-61843IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-52041IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-102042IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9812043IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9956189IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-56188IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-96488IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-56589IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-46787IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356218246IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5218245IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9220245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6222247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5224246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605264292IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-6264291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6266295IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8266290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5270290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MVEATVRATG LYPERIGDLP CQFYLKTGTC KFGASCKFHH PKNAGGSMSH VPLNIYGYPV  60
REGENECSYY LKTGQCKFGI TCKFHHPQPA GTTVPPPPPP PASAPQFYPS VQSLLPDQYG  120
GPSSSLRVAR TLLPGSYMQG AYGPMLLTPG VVPIPGWSPY SAPVSPALSP GAQHAVGATS  180
LYGVTQLSST SPSLPGVYPS LSSPTGVIQK EQAAFPERPG EPECQYYLKT GDCKFGTSCK  240
FHHPRDRVPP RANCILSPIG LPLRPGVQRC TFYVQNGFCK FGSKCKFDHP VGTIRYNPSA  300
SSLADAPVAP YPVNSLLGAL AAAPSSSSTE LITGGAKDPY LTGLPTSRST SSISAGLIFS  360
QSGGSIPFSD LQLSSQTSLP LTGSRISRQG REIRRSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g054370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082453.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLR0HC920.0R0HC92_9BRAS; Uncharacterized protein
STRINGXP_010507840.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein