PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g054400.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family DBB
Protein Properties Length: 257aa    MW: 28350 Da    PI: 5.1561
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g054400.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.6e-061242434
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                    r C+ +++  +  +C+ ++  lC  C  + H
  Csa06g054400.2 12 RLCDYCDSSVALVYCKADSAKLCLACDKQVH 42
                    68**************************999 PP
2zf-B_box201.4e-065597441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvp 41
                      C+ +++ + +lfCe+ +  lC++C  ++H       H+++p
  Csa06g054400.2 55 LLCDSCHDSPSSLFCETERFVLCQNCDWQHHTAsstslHSRRP 97
                    57**************************977447777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.0E-14956IPR000315B-box-type zinc finger
PROSITE profilePS501199.485956IPR000315B-box-type zinc finger
CDDcd000211.75E-51256No hitNo description
PROSITE profilePS501199.7695298IPR000315B-box-type zinc finger
CDDcd000212.44E-75697No hitNo description
SMARTSM003360.925798IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MMEKEEEEGH RRLCDYCDSS VALVYCKADS AKLCLACDKQ VHVANQLFGK HFRSLLCDSC  60
HDSPSSLFCE TERFVLCQNC DWQHHTASST SLHSRRPFEG FTGCPSVPEL LSIVGLDDLS  120
PDSGLLWDQT PPEIISLNDL LVSGGSDTHN FRATDVPPLP KNRHATCGKY KDEMIRQLRG  180
RARSEPSCLK FEAASDAEID AGFQFLAPDL FPTCELVRLS SSSSSSCGCC LLSVDLSTQM  240
STLVKGEWNE MVRSAR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g054400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935980.0AB493598.1 Arabidopsis thaliana At2g47890 mRNA for hypothetical protein, partial cds, clone: RAAt2g47890.
GenBankBT0234130.0BT023413.1 Arabidopsis thaliana At2g47890 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518506.21e-158PREDICTED: zinc finger protein CONSTANS-LIKE 13
SwissprotO822561e-132COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLR0FWW41e-132R0FWW4_9BRAS; Uncharacterized protein
STRINGXP_010518506.11e-159(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.21e-124B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]