PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07154s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 84aa    MW: 9758 Da    PI: 5.197
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07154s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.2e-071740226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k  lC ff + G+C+ G +CkF+H+
  Csa07154s010.1 17 KSILCEFFKA-GQCQKGFKCKFSHD 40
                    6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.23E-71540IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2721542IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-51541IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-51740IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-51740IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
FKVAISQPKV PVGVDPKSIL CEFFKAGQCQ KGFKCKFSHD LNIQRKGEKI DIYSDKRDED  60
GDMDEWDQET LEKVVESKKN EYNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07154s010.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065691e-66AC006569.5 Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete sequence.
GenBankCP0026851e-66CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297939.11e-54zinc finger CCCH domain-containing protein 21
RefseqXP_010416033.12e-54PREDICTED: zinc finger CCCH domain-containing protein 21
RefseqXP_010489069.12e-54PREDICTED: zinc finger CCCH domain-containing protein 21 isoform X1
RefseqXP_010489070.12e-54PREDICTED: zinc finger CCCH domain-containing protein 21 isoform X2
RefseqXP_010495923.16e-55PREDICTED: zinc finger CCCH domain-containing protein 21-like
RefseqXP_022564145.19e-56zinc finger CCCH domain-containing protein 21-like
RefseqXP_022564146.19e-56zinc finger CCCH domain-containing protein 21-like
SwissprotQ9SK745e-55C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLR0G5K73e-53R0G5K7_9BRAS; Uncharacterized protein
STRINGCagra.0338s0020.1.p5e-54(Capsella grandiflora)
STRINGXP_006297939.15e-54(Capsella rubella)
STRINGXP_010416033.16e-54(Camelina sativa)
STRINGXP_010489070.16e-54(Camelina sativa)
STRINGXP_010495923.12e-54(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3230322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.12e-57C3H family protein