PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07574s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 62aa    MW: 6823.98 Da    PI: 10.9056
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07574s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.11.5e-151350239
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    ++e k  r vtfskRr+g++ KA EL+ L da++a++ 
  Csa07574s010.1 13 KVEGKKPRAVTFSKRRKGLFSKAAELCLLSDAQIAILA 50
                    6788999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-9157IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.577449IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-8626IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-141055IPR002100Transcription factor, MADS-box
PfamPF003193.1E-141351IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-82641IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-84162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MGGLKRKIDT EKKVEGKKPR AVTFSKRRKG LFSKAAELCL LSDAQIAILA TPVSSNSHNS  60
FY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11628KKPRAVTFSKRRK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07574s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431144.11e-36PREDICTED: agamous-like MADS-box protein AGL97
RefseqXP_010431147.11e-36PREDICTED: agamous-like MADS-box protein AGL97
RefseqXP_010431165.11e-36PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6335e-25AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A178W5091e-22A0A178W509_ARATH; AGL97
STRINGXP_010431144.15e-36(Camelina sativa)
STRINGXP_010431147.15e-36(Camelina sativa)
STRINGXP_010431165.15e-36(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.12e-27AGAMOUS-like 97
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]