PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g002290.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 227aa    MW: 25346.7 Da    PI: 6.3866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g002290.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY52.31.1e-16891272159
                     -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      r+YYrCt++ C vkk+vers +dp+ v++tYeg+H h+
  Csa07g002290.2  89 GRNYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHSHP 127
                     59************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-1583129IPR003657WRKY domain
SuperFamilySSF1182901.18E-1388129IPR003657WRKY domain
SMARTSM007742.6E-890128IPR003657WRKY domain
PfamPF031063.2E-1190127IPR003657WRKY domain
PROSITE profilePS5081117.86790129IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MENAGAGVPF YDLGQTRVYP LFSDFHHLSA ERYPVGFMDL LGVHRHSLTH TPLMHFPTTT  60
PKSSSSEAVN EDHEKKRDNE EEXSFCLLGR NYYRCTTTWC DVKKRVERSF SDPSSVITTY  120
EGQHSHPRPV PKGDSLGFNG SASRAHFGLP TLPPQLLDYN NHQQQGQSSF GAGYIIRQEK  180
GSDDDDHDDP VVKKSRTRDL LDGAGSVKEH GLLQDVVSSH IIKDEC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g002290.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4211551e-128AF421155.1 Arabidopsis thaliana WRKY transcription factor 68 (WRKY68) mRNA, complete cds.
GenBankAL1625071e-128AL162507.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T12C14.
GenBankCP0026861e-128CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010468965.11e-127PREDICTED: probable WRKY transcription factor 68
SwissprotQ93WV61e-104WRK68_ARATH; WRKY transcription factor 68
TrEMBLA0A178VDY31e-101A0A178VDY3_ARATH; WRKY transcription factor
STRINGXP_010468965.11e-127(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62340.11e-105WRKY family protein