PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g002990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 381aa    MW: 43839.7 Da    PI: 6.8297
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g002990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.83.3e-263595259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                    dDg++WrKYGqK+++gs++pr+YYrCt++   gC + k+v++s+ dp++ e++Y ++H+++
  Csa07g002990.1 35 DDGFSWRKYGQKDIHGSKNPRGYYRCTHRftrGCLAVKQVQKSDADPSCYEVKYLESHTCN 95
                    8***************************9999***************************96 PP
2WRKY36.21.2e-112072501959
                     SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  19 efprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     + + +YYrCt++   gC + k+v++s+ dp++ e++Y ++H+++
  Csa07g002990.1 207 PRTLGYYRCTHRftrGCLAVKQVQKSDADPSCYEVKYLESHTCN 250
                     55678******9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-242995IPR003657WRKY domain
PROSITE profilePS5081121.0462992IPR003657WRKY domain
SuperFamilySSF1182902.09E-223295IPR003657WRKY domain
SMARTSM007743.4E-333496IPR003657WRKY domain
PfamPF031061.2E-223594IPR003657WRKY domain
SMARTSM007748.6E-8199251IPR003657WRKY domain
PROSITE profilePS5081110.487201247IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.3E-10205250IPR003657WRKY domain
SuperFamilySSF1182901.7E-9205250IPR003657WRKY domain
PfamPF031062.3E-9206249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDPSNNKKRR TSEKKTSEKV KICVGREQEG TSQFDDGFSW RKYGQKDIHG SKNPRGYYRC  60
THRFTRGCLA VKQVQKSDAD PSCYEVKYLE SHTCNGNFLL STTKHSVSLS KEEERNRVPK  120
LHHVREQSED TIKHMKSEEL MLSLDDLENK NEIFRTFSFS NPETENTTGW KILMENFTPT  180
TTTESGITNE LIYASXENMV RKIFTDPRTL GYYRCTHRFT RGCLAVKQVQ KSDADPSCYE  240
VKYLESHTCN GNFLLSTTKH SVSLSKEEER NRVPKLHHVR EQSEDTIKHM KSEELMLSLD  300
DLENKNEIFR TFSFSNPETE NTTGWKILME NFTPTTTTES GITNELIYAS SASVANSPTD  360
DSCFSSLKNI LDLSYDWSLM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-183494868OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of osmotic stress responses and stomatal movement (PubMed:24773321). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Positive regulator of EDS1-dependent defense against E.amylovora (PubMed:22316300). Together with WRKY70 and WRKY53, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). Together with WRKY54 and WRKY70, promotes brassinosteroid (BR)-regulated plant growth but prevent drought response by modulating gene expression (PubMed:28576847). {ECO:0000250, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:22325892, ECO:0000269|PubMed:24773321, ECO:0000269|PubMed:28576847}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g002990.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt and hydrogen peroxide treatments (PubMed:24773321). Induced by salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Up-regulated by E.amylovora (PubMed:22316300). Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:22325892, ECO:0000269|PubMed:24773321}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413369.11e-142PREDICTED: probable WRKY transcription factor 46
SwissprotQ9SKD95e-60WRK46_ARATH; Probable WRKY transcription factor 46
TrEMBLA0A1J3JLL92e-85A0A1J3JLL9_NOCCA; Putative WRKY transcription factor 46 (Fragment)
STRINGXP_010413369.11e-142(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48882352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-53WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sheikh AH, et al.
    Regulation of WRKY46 Transcription Factor Function by Mitogen-Activated Protein Kinases in Arabidopsis thaliana.
    Front Plant Sci, 2016. 7: p. 61
    [PMID:26870073]
  3. Yan JY, et al.
    A WRKY Transcription Factor Regulates Fe Translocation under Fe Deficiency.
    Plant Physiol., 2016. 171(3): p. 2017-27
    [PMID:27208259]
  4. Chen J, et al.
    Arabidopsis WRKY46, WRKY54, and WRKY70 Transcription Factors Are Involved in Brassinosteroid-Regulated Plant Growth and Drought Responses.
    Plant Cell, 2017. 29(6): p. 1425-1439
    [PMID:28576847]
  5. Ma J, et al.
    Overexpression of TaWRKY146 Increases Drought Tolerance through Inducing Stomatal Closure in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 2036
    [PMID:29225611]