PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g003050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 341aa    MW: 38555.9 Da    PI: 5.2077
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g003050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.3e-18116176156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng......krkrfslgkfgtaeeAakaaiaarkklege 56 
                     ++y+GVr++k +g+++AeIrdps++        r+r++lg+f taeeAa a+++a+ +++g+
  Csa07g003050.1 116 KKYRGVRQRK-WGKFAAEIRDPSSRTrirdpsSRTRVWLGTFVTAEEAAVAYDRAAIQFRGH 176
                     59*******9.**********9994446668555************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.12E-27116182No hitNo description
PROSITE profilePS5103222.497117183IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-19117183IPR016177DNA-binding domain
PfamPF008477.1E-12117176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-27117182IPR001471AP2/ERF domain
SMARTSM003801.1E-33117189IPR001471AP2/ERF domain
PRINTSPR003675.4E-10118129IPR001471AP2/ERF domain
PRINTSPR003675.4E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTVVVFKQGH GRRTRRVKFS EHRTVTNVAA KQSEDSPRLV RIAVTDPFAT DSSSGEDEED  60
NVTVAAPRVK RYVEEIRFCQ GESSSSSAVV TARKAKHKAE KAVVDDDVSS SSVKPKKYRG  120
VRQRKWGKFA AEIRDPSSRT RIRDPSSRTR VWLGTFVTAE EAAVAYDRAA IQFRGHNALT  180
NFLTPPPSPP PTPPPPPLIV LDTVPACDSG KDSRQTLHSP TSVLRFNANE ETEYRTEHEI  240
EPIELSPTAL VKSEPWFPDP FPLPDLSLAD DYLWDSKIAP DLLFLDYEEL KIQSPLLQLN  300
TEYWQKEGNE SEDFSFRLIE EDFESSLWDV DNFFDHHPRD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-20114182262ATERF1
3gcc_A9e-20114182262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g003050.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418586.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like, partial
SwissprotQ9M3741e-128CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLR0H5A31e-145R0H5A3_9BRAS; Uncharacterized protein
STRINGXP_010418586.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.13e-84cytokinin response factor 6