PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g003260.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 180aa MW: 20359.8 Da PI: 5.9421

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g003260.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	36.9	7.1e-12	14	53	23	59
EEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 23 sYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +YYrCt++ gC + k+v++s+ dp++ e++Y ++H+++ Csa07g003260.2 14 GYYRCTHRftrGCLAVKQVQKSDADPSCYEVKYLESHTCN 53 7****9999*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00774	6.1E-8	4	54	IPR003657	WRKY domain
SuperFamily	SSF118290	5.1E-10	10	53	IPR003657	WRKY domain
Pfam	PF03106	7.8E-10	13	52	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	4.3E-10	14	53	IPR003657	WRKY domain
PROSITE profile	PS50811	9.684	14	50	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006508	Biological Process	proteolysis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008233	Molecular Function	peptidase activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MVQVILPNWK VLLGYYRCTH RFTRGCLAVK QVQKSDADPS CYEVKYLESH TCNGNLLLST 60 TKHSVSLSKE EERNRVPKLH HVREQSEDTI KHMKSEELML SLDDLENKKE IFRTFSFSNP 120 ETENTTGWKN LMENFSPTTT SESGITNELI SASSASVANS PTEDSCFSSL KNILDLSYD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of osmotic stress responses and stomatal movement (PubMed:24773321). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Positive regulator of EDS1-dependent defense against E.amylovora (PubMed:22316300). Together with WRKY70 and WRKY53, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). Together with WRKY54 and WRKY70, promotes brassinosteroid (BR)-regulated plant growth but prevent drought response by modulating gene expression (PubMed:28576847). {ECO:0000250, ECO:0000269\|PubMed:22316300, ECO:0000269\|PubMed:22325892, ECO:0000269\|PubMed:24773321, ECO:0000269\|PubMed:28576847}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g003260.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and hydrogen peroxide treatments (PubMed:24773321). Induced by salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Up-regulated by E.amylovora (PubMed:22316300). Triggered by P.syringae (PubMed:22325892). {ECO:0000269\|PubMed:22268143, ECO:0000269\|PubMed:22316300, ECO:0000269\|PubMed:22325892, ECO:0000269\|PubMed:24773321}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019082498.1	1e-120	PREDICTED: probable WRKY transcription factor 46, partial
Swissprot	Q9SKD9	4e-51	WRK46_ARATH; Probable WRKY transcription factor 46
TrEMBL	R0FTA9	4e-77	R0FTA9_9BRAS; Uncharacterized protein
STRING	XP_010418590.1	1e-130	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46400.1	2e-44	WRKY DNA-binding protein 46

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sheikh AH, et al. Regulation of WRKY46 Transcription Factor Function by Mitogen-Activated Protein Kinases in Arabidopsis thaliana. Front Plant Sci, 2016. 7: p. 61 [PMID:26870073] Yan JY, et al. A WRKY Transcription Factor Regulates Fe Translocation under Fe Deficiency. Plant Physiol., 2016. 171(3): p. 2017-27 [PMID:27208259] Chen J, et al. Arabidopsis WRKY46, WRKY54, and WRKY70 Transcription Factors Are Involved in Brassinosteroid-Regulated Plant Growth and Drought Responses. Plant Cell, 2017. 29(6): p. 1425-1439 [PMID:28576847] Ma J, et al. Overexpression of TaWRKY146 Increases Drought Tolerance through Inducing Stomatal Closure in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 2036 [PMID:29225611]