PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g004310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 630aa    MW: 68395.2 Da    PI: 4.4716
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g004310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.71.2e-9727062819374
            GRAS  19 laqalLarlselaspdgd............pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                     laq +Larl+++ ++++d            p++R+a+y+teAL++ l++      ++ pps ++++n + ++aa+++fse sP+l+f ++taNq+
  Csa07g004310.1 270 LAQGILARLNHNLNKKDDddddtnsnnpkpPLHRAASYITEALHSLLQD------SSSPPSLSPPQNLIFRIAAYRAFSESSPFLQFVNFTANQT 358
                     89**********7776655899***************************......7889999999****************************** PP

            GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     Ile++eg+ +r+Hi+Dfdi++G+QW++L+q+La +R+  ++ppsl+iT+++sp+++ ++ el+ t+e+L++fA+e+gv+fe+++l ++ l + + 
  Csa07g004310.1 359 ILESLEGSsDRIHIVDFDIGYGGQWASLIQELAgKRNrsSSPPSLKITAFASPSTVsDEFELRFTEENLRSFAAETGVSFEIELLSMEILLNPTC 453
                     *******99************************85556699*************9999***************************8888888888 PP

            GRAS 192 eeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseer 282
                     + L++ +   +Ea+ Vnl ++             + + +L+++k++sP+vvv++++ +d+ n+++F +++++al+yy++l++sl+++   ++e+ 
  Csa07g004310.1 454 WPLSLFRsseKEAISVNLPISSVVSG--------YLPLILRFLKQISPNVVVCSDRTCDRnNDAPFPNGVINALQYYTTLLESLDSS---NAEAV 537
                     88877666669999999999555444........5677**********************99**********************999...78999 PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpLvsvSaWr 374
                     + vEr++++++i+++++++ ++    +e+   Wr+ ++++GF+pv+ls++a++qa++ll++ +++g+++e++     slvl+W++++Lv+vSaW+
  Csa07g004310.1 538 TRVERFCVQPSIQKLLTNRYRW----MERTPPWRSLFGQCGFSPVTLSQTAETQAEYLLQRNPMRGFHLEKRqssLSSLVLCWQRKELVAVSAWK 628
                     **********************....99******************************************8822245678**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.144221605IPR005202Transcription factor GRAS
PfamPF035144.1E-95270628IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MPLPFEQFQG KGVLGFLDSS SSSPGYKIWG PDKLHGRVVV EDLCFVVNNG GFSEPTSVLD  60
SVRSPSPFVS SSTTTLSSSH GGGGGAAAAA AADFSGADEK CDPMGFEDLD GVLSGGSPGQ  120
EESILRLIMS GGGGDVVDPG SEFVGFDTGS GSDPVIDNPN PLFGYGFPFH DATNPEILIN  180
PSPDFFSDPP AKRLNSGQPG SQQPQQWGFQ FSDPGHESHD PFLTPPKLAG EDEHDQGDQS  240
TLIIDQLFSA AVELIGRTTN GGDNNPNPIL AQGILARLNH NLNKKDDDDD DTNSNNPKPP  300
LHRAASYITE ALHSLLQDSS SPPSLSPPQN LIFRIAAYRA FSESSPFLQF VNFTANQTIL  360
ESLEGSSDRI HIVDFDIGYG GQWASLIQEL AGKRNRSSSP PSLKITAFAS PSTVSDEFEL  420
RFTEENLRSF AAETGVSFEI ELLSMEILLN PTCWPLSLFR SSEKEAISVN LPISSVVSGY  480
LPLILRFLKQ ISPNVVVCSD RTCDRNNDAP FPNGVINALQ YYTTLLESLD SSNAEAVTRV  540
ERFCVQPSIQ KLLTNRYRWM ERTPPWRSLF GQCGFSPVTL SQTAETQAEY LLQRNPMRGF  600
HLEKRQSSLS SLVLCWQRKE LVAVSAWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3130062839375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g004310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1622950.0AL162295.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T4C21.
GenBankAY0640620.0AY064062.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankAY0963720.0AY096372.1 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413536.10.0PREDICTED: scarecrow-like protein 22
SwissprotQ9M0000.0SCL22_ARATH; Scarecrow-like protein 22
TrEMBLR0H1P50.0R0H1P5_9BRAS; Uncharacterized protein
STRINGXP_010413536.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150661619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.10.0GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]