PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g004350.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 254aa    MW: 28845.1 Da    PI: 8.6797
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g004350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC +C ksF +   L  H+r+H
  Csa07g004350.1  4 YKCRYCFKSFANGRALGGHMRSH 26
                    9*********************9 PP
2zf-C2H216.52.5e-05206228123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ Cgk+F++   L  H  +H
  Csa07g004350.1 206 YKCETCGKVFKSYQALGGHRASH 228
                     9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.0E-4326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.47E-10326No hitNo description
PfamPF139121.4E-6428IPR007087Zinc finger, C2H2
SMARTSM003550.016426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637436IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576673.47E-10201228No hitNo description
PfamPF139121.4E-11205230IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.635206233IPR007087Zinc finger, C2H2
SMARTSM003550.0071206228IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MENYKCRYCF KSFANGRALG GHMRSHMPSL HVDEERPSQL SYETTESDVS SSSSKEKRNG  60
KKKKNDPKFA STSSLLLLED EEGDDESETE SSRNVINLTR KRSKRTRKLD SFATKKKKVK  120
TSQLGYKPAE SDPEPPHSSA SDTTTEEDLA FCLMMLSRDK WKKNKSSNNK DVVEEIETGE  180
EEEEEGYNNR LSKMNRTTTT TTKGRYKCET CGKVFKSYQA LGGHRASHKK NRRMIDLNLP  240
APTEEDEVSV VFQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199117RKRSKRTRKLDSFATKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g004350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1183993e-67AK118399.1 Arabidopsis thaliana At3g60580 mRNA for putative zinc finger protein, complete cds, clone: RAFL19-65-L22.
GenBankAL1386463e-67AL138646.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T8B10.
GenBankBT0052833e-67BT005283.1 Arabidopsis thaliana At3g60580 mRNA, complete cds.
GenBankCP0026863e-67CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413542.11e-126PREDICTED: zinc finger protein ZAT9-like
SwissprotQ9M2022e-95ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLR0H5511e-110R0H551_9BRAS; Uncharacterized protein
STRINGXP_010413542.11e-125(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-69C2H2-like zinc finger protein