PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g004390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 332aa    MW: 36103.8 Da    PI: 6.1737
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g004390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.7e-18251285135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Csa07g004390.1 251 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 285
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-15245295IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.543245281IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-14248309No hitNo description
Gene3DG3DSA:3.30.50.101.5E-13249283IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.17E-13250297No hitNo description
PROSITE patternPS003440251276IPR000679Zinc finger, GATA-type
PfamPF003209.7E-16251285IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDVYGMSSPD LLRIDDLLDF SNDEIFSSSS STVTSSAASS VASENPFNFP SSAHTSPPLL  60
TDFTHDLCVP SDDAAHLEWL SRFVDDSFSD FPTNPLTMSA RPESFVTAPF QNLNTRXSTV  120
TSSAASENPF NFPSSAYTSP PLLTDFTHDL CVPSDDAAHL EWLSRFVDDS FSDFPTNPLT  180
MSVRPEVSFT GKPRSRRSRA PAPSVAGTWA PMPESELCHG SVPKPKHKKE YNGESVTADV  240
GGGGGGGARR CTHCASEKTP QWRTGPLGPK TLCNACGVRY KSGRLVPEYR PASSPTFVLT  300
QHSNSHRKVM ELRRQKEQQE SCVSIPAFQP R*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g004390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3788811e-115AF378881.1 Arabidopsis thaliana AT3g60530/T8B10_190 mRNA, complete cds.
GenBankAY0395321e-115AY039532.1 Arabidopsis thaliana AT3g60530/T8B10_190 mRNA, complete cds.
GenBankAY0504761e-115AY050476.1 Arabidopsis thaliana AT3g60530/T8B10_190 mRNA, complete cds.
GenBankY136511e-115Y13651.1 Arabidopsis thaliana mRNA for GATA transcription factor 4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082904.11e-143PREDICTED: GATA transcription factor 4-like isoform X1
SwissprotO497431e-129GATA4_ARATH; GATA transcription factor 4
TrEMBLR0FQ221e-134R0FQ22_9BRAS; GATA transcription factor
STRINGXP_010413546.11e-142(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-117GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]