PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g004970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 634aa    MW: 70357.8 Da    PI: 9.9459
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g004970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.9e-093789248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     + W t+E++ l +avk++   +W+++a+ ++      +  ++ +c++++q+++
   Csa07g004970.1 37 QVWGTWEELVLTCAVKRHAFTDWDSVAKDVQsrsrssLIASAVNCRLKYQDLK 89
                     68*****************************9998888889999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.27E-53290IPR009057Homeodomain-like
PfamPF002491.4E-73789IPR001005SANT/Myb domain
CDDcd001672.12E-43989No hitNo description
Gene3DG3DSA:1.20.920.104.5E-19267415IPR001487Bromodomain
SMARTSM002973.8E-21282391IPR001487Bromodomain
SuperFamilySSF473703.79E-18284389IPR001487Bromodomain
CDDcd043693.29E-16289386No hitNo description
PfamPF004396.4E-13296374IPR001487Bromodomain
PROSITE profilePS5001413.451301372IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MNDDDDTNNI NSCSGFDNNR IGDGDGDGDC NINQISQVWG TWEELVLTCA VKRHAFTDWD  60
SVAKDVQSRS RSSLIASAVN CRLKYQDLKR RFKDSVDGGE GNREAAVAAA EEDDEVGEIP  120
WLDQLRSLHV AELRREVQRR DDSILSLQLK VKKLEEEEEK DGDDGDNKPD LGNDETKPAK  180
LNRETTESDR DDNRSMNESN STASVDKVAD HDGDKMVEAY SDPDPVNKAA APKEEEKEEE  240
EKTVSKRSEM SNSGELDESG TSTGHGNRKG QKKYRSGGGG GEIKSAGYKS QPLIDIIKLI  300
RSHPRGSVFE SRLRSQETKD YKRIIRQHLD MKTIEKKLEK GSYASSSLSF YRDLKLLYTN  360
AIVFFPPSSS ESLAAQELRS LVSNEIKKRT GILGHGVIKS EAGSSVSRQK SSVLPLVACK  420
KNSSFSKKTS PSSSFKQKDE KKSQEVSEEK TVTTTTSARS SRRTSKEVAV VAKDTKIGRA  480
KNNNKKQKAT KTDSSSDDDD DEKEETPKTA KKTVAIPSDK KKSVADFLKR IKKNSPQKGK  540
ETASKNQKKS DGNIKKENDH PKKSDGNVKK ENSKAKPREL RSNSTGKKKA EVENNNSKSS  600
SKRKQPKETA EPTGKRGRES GKDSKQPKKR TRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g004970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0563930.0AY056393.1 Arabidopsis thaliana AT3g60110/T2O9_90 mRNA, complete cds.
GenBankBT0005190.0BT000519.1 Arabidopsis thaliana unknown protein (At3g60110/T2O9_90) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413602.10.0PREDICTED: transcriptional regulator ATRX
TrEMBLD7LWL10.0D7LWL1_ARALL; Uncharacterized protein
STRINGXP_010413602.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein