PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g011480.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

DBB

Protein Properties

Length: 263aa MW: 29278 Da PI: 4.7435

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g011480.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.6	5.1e-08	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ +++l C ++ lC+ C +e+H H+ Csa07g011480.1 4 QCDVCEKAPATLICCADEAALCARCDVEIHAAnklaskHQ 43 7*****************************6556666665 PP
2	zf-B_box	19.8	1.7e-06	86	106	14	34
zf-B_box 14 lqlfCedCqqllCedClleeH 34 + +fC +++ llC+dC +++H Csa07g011480.1 86 AFIFCVEDRALLCRDCDEATH 106 668****************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.229	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	6.98E-7	3	47	No hit	No description
SMART	SM00336	1.2E-9	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.5E-6	4	44	IPR000315	B-box-type zinc finger
SMART	SM00336	1.5E-6	83	120	IPR000315	B-box-type zinc finger
CDD	cd00021	3.26E-4	83	119	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MKIQCDVCEK APATLICCAD EAALCARCDV EIHAANKLAS KHQRLFLDSL STKFPPCDIC 60 LLFLTDSLGV MTNKFLSFVS LFEKAAFIFC VEDRALLCRD CDEATHVPNT RSANHQRFLA 120 TGIRVALSST SCSQEVEKNH FDPSNQQNSK QVLSKPQTQQ SAAPSPLWAT DEFFSYSDLD 180 CSNKEKEQLD IGELDWLAEM GFFGDQPDQE ALPAAEVPEL SFSHLAHVHS DNRAMKSNVS 240 NKKPRLEIRY DDEDHFLVPD LG*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:23624715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g011480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF323666	1e-180	AF323666.1 Arabidopsis thaliana B-box zinc finger protein STH mRNA, complete cds.
GenBank	AF325077	1e-180	AF325077.1 Arabidopsis thaliana putative CONSTANS-like B-box zinc finger protein (At2g31380) mRNA, complete cds.
GenBank	AF370311	1e-180	AF370311.1 Arabidopsis thaliana putative CONSTANS B-box zinc finger protein (At2g31380) mRNA, complete cds.
GenBank	AY063097	1e-180	AY063097.1 Arabidopsis thaliana putative CONSTANS B-box zinc finger protein (At2g31380) mRNA, complete cds.
GenBank	BT000798	1e-180	BT000798.1 Arabidopsis thaliana At2g31380 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010414132.1	1e-174	PREDICTED: B-box zinc finger protein 25-like
Swissprot	Q9SID1	1e-155	BBX25_ARATH; B-box zinc finger protein 25
TrEMBL	A0A178VP39	1e-153	A0A178VP39_ARATH; STH
STRING	XP_010414132.1	1e-173	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2711	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31380.1	1e-158	salt tolerance homologue

Publications ? help Back to Top
Gangappa SN,Holm M,Botto JF Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development. Plant Signal Behav, 2014. [PMID:23733077] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang X,Lin R Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. Plant Signal Behav, 2017. 12(9): p. e1365213 [PMID:28922622]