PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g011490.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 428aa MW: 47547.7 Da PI: 4.98

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g011490.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.8	1.5e-10	233	291	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l l+ l+ e+ Csa07g011490.1 233 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVEN 291 9********************************************99998887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.2E-15	229	293	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.565	231	294	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.4E-11	233	287	No hit	No description
Pfam	PF00170	8.1E-9	233	285	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.32E-10	233	284	No hit	No description
CDD	cd14703	2.40E-24	234	283	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MDKEKSPAPC GGGLPPPSPS GRCSAFSDSG PSGHGSDANR ISHDISRMLD NPPKKIGHRR 60 AHSEILTLPD DLSFDSDLGV VGNAADGPSF SDETDEDLLS MYLDMDNDLG VVGNAADGPS 120 FSDETDEDLL SMYLDMDKFN SSATSSAQVG EPSGGTPWKH EPMMQTGSAS NPQNTLNSFG 180 ERPRIRHQHS QSMDGSMNIN EMLMSGNEDD SVIDAKKSMS ATKLAELALI DPKRAKRIWA 240 NRQSAARSKE RKTRYIFELE RKVQTLQTEA TTLSAQLTLL QRDTNGLTVE NNELKLRLQT 300 MEQQVHLQDE LNEALKEEIQ HLKVLTGQVA PSALNYGSFG SNQQFYSNNQ SMQTILAAQQ 360 FQQLQIHSQK QQQQQQQQQQ QQYQFQQQQM QQLMQQRMQQ QEQQNGGIGV CGAKEKPFGK 420 AIEGKIMW

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MDKEKSPAPC GGGLPPPSPS GRCSAFSDSG PSGHGSDANR ISHDISRMLD NPPKKIGHRR  60
AHSEILTLPD DLSFDSDLGV VGNAADGPSF SDETDEDLLS MYLDMDNDLG VVGNAADGPS  120
FSDETDEDLL SMYLDMDKFN SSATSSAQVG EPSGGTPWKH EPMMQTGSAS NPQNTLNSFG  180
ERPRIRHQHS QSMDGSMNIN EMLMSGNEDD SVIDAKKSMS ATKLAELALI DPKRAKRIWA  240
NRQSAARSKE RKTRYIFELE RKVQTLQTEA TTLSAQLTLL QRDTNGLTVE NNELKLRLQT  300
MEQQVHLQDE LNEALKEEIQ HLKVLTGQVA PSALNYGSFG SNQQFYSNNQ SMQTILAAQQ  360
FQQLQIHSQK QQQQQQQQQQ QQYQFQQQQM QQLMQQRMQQ QEQQNGGIGV CGAKEKPFGK  420
AIEGKIMW

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g011490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317087	0.0	AK317087.1 Arabidopsis thaliana AT2G31370 mRNA, complete cds, clone: RAFL21-87-G20.
GenBank	AY057534	0.0	AY057534.1 Arabidopsis thaliana At2g31370/T28P16.14 mRNA, complete cds.
GenBank	AY113058	0.0	AY113058.1 Arabidopsis thaliana At2g31370/T28P16.14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010414133.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_010414135.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	0.0	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	D7LDK3	0.0	D7LDK3_ARALL; Uncharacterized protein
STRING	XP_010414133.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31370.5	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]