PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g012500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 387aa    MW: 43733.3 Da    PI: 10.4735
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g012500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986e-31320378360
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eHnh+k
  Csa07g012500.1 320 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 378
                     99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.4E-18270316IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.0E-33306378IPR003657WRKY domain
PROSITE profilePS5081130.366313379IPR003657WRKY domain
SuperFamilySSF1182901.44E-26316378IPR003657WRKY domain
SMARTSM007742.0E-37318378IPR003657WRKY domain
PfamPF031062.1E-26320377IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEEIEGTNRA AVESCHRVLN LLNKPQQQQQ QQQQDHVGFE RNLVSETREA VFRFKRVSTL  60
LSTSVVGHAR FRRAKKLETH VSQTFLLDPS SHQRTELASS SSQKPPVLRS GFQELSLRPS  120
DSLTLGTKSF TLNPNAKAPL LQLNQQPIPS SNFSNLFPDK QQQQQQQLQK QQQQQQQLQQ  180
QQQFHERLKA HHLHQQQQLQ KHQAELLLRK CNGGISLSFD NSSCTPTMSS TRSFVSSLSI  240
DGSVANLEGK NSFHLVGVPS STDQNSQHSK RKCPLKGDEH GGLKCGNSSR CHCSKKRKHR  300
VRRSIRVPAI SNKVADIPPD DYSWRKYGQK PIKGSPYPRG YYKCSSMRGC PARKHVERCL  360
EDPAMLIVTY EAEHNHPKLP SQAITT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20306381276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g012500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727470.0AF272747.1 Arabidopsis thaliana WRKY DNA-binding protein 21 (WRKY21) mRNA, complete cds.
GenBankAY1364410.0AY136441.1 Arabidopsis thaliana expressed protein (At2g30590) mRNA, complete cds.
GenBankBT0002310.0BT000231.1 Arabidopsis thaliana expressed protein (At2g30590) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414241.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043360.0WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLR0HPU00.0R0HPU0_9BRAS; Uncharacterized protein
STRINGXP_010414241.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.10.0WRKY DNA-binding protein 21