PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g012830.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LBD

Protein Properties

Length: 275aa MW: 29785.5 Da PI: 8.146

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g012830.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.9	1.2e-36	49	153	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll......kalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l +++ e++r da++slvyeA+ r+rdP+yG++g i++lq+++++ Csa07g012830.1 49 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLlglkvlQEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQS 143 7***************************************9885222222677999********************************* PP DUF260 90 lkaelallke 99 l++el ++++ Csa07g012830.1 144 LQTELTTVRT 153 ***99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.245	48	155	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-37	49	152	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
EEFGEYYEIV KKIKKDPTYE TTTDHHAVMG IRRHVAAVPP GTTLNTVTPC AACKLLRRRC 60 AEECPFSPYF SPHEPHKFAA VHKVFGASNV SKMLLGLKVL QEVGESQRGD AANSLVYEAN 120 LRLRDPIYGC MGAISALQHH IQSLQTELTT VRTDILRYKY REATTINSLQ NNNNNFNNTT 180 TTSSVSCDHH ALASAILLSP PPPPPPPPRP PRLLSSQPAP PPTPPGSLPS PSMVVSSSSS 240 SNSSATNSMY NPPPSSAAGY SNSMSSDNNV HYFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-39	42	166	4	122	LOB family transfactor Ramosa2.1
5ly0_B	6e-39	42	166	4	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g012830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002338	1e-170	AC002338.3 Arabidopsis thaliana chromosome 2 clone T9D9 map m283, complete sequence.
GenBank	CP002685	1e-170	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010414279.1	1e-141	PREDICTED: LOB domain-containing protein 13
Swissprot	Q9AT61	1e-129	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	R0HX36	1e-130	R0HX36_9BRAS; Uncharacterized protein
STRING	XP_010414279.1	1e-140	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-102	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]