PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g012930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 393aa    MW: 44058.7 Da    PI: 7.5758
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g012930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY941.1e-29165222260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +Dgy WrKYGqK+vk+se+prsY++Ct+++C +kk ve++  d++++ei+Y+g Hnh+k
  Csa07g012930.1 165 NDGYGWRKYGQKQVKKSENPRSYFKCTYPNCVSKKIVETAF-DGQITEIIYKGGHNHPK 222
                     8****************************************.***************85 PP
2WRKY102.42.5e-32327384259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK+vkg+++prsYY+Ct++gC v+k+versa d+++v +tYeg+Hnh+
  Csa07g012930.1 327 VDGFRWRKYGQKVVKGNTNPRSYYKCTYQGCGVRKQVERSAADERAVLTTYEGRHNHD 384
                     5********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-24152223IPR003657WRKY domain
SuperFamilySSF1182907.06E-23161223IPR003657WRKY domain
SMARTSM007745.6E-30164222IPR003657WRKY domain
PROSITE profilePS5081120.036165223IPR003657WRKY domain
PfamPF031065.9E-22165221IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-34311386IPR003657WRKY domain
SuperFamilySSF1182904.58E-28318386IPR003657WRKY domain
PROSITE profilePS5081134.268321386IPR003657WRKY domain
SMARTSM007745.3E-37326385IPR003657WRKY domain
PfamPF031063.0E-25328384IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSSTSFTDLL ACSGVDCYED DEDLRVPGSS FGGYYPERTG SGLPKFKTAQ PPPLPISPSS  60
HNFTFSDFLD SPLLLSSSHS LISPTTGAFP FQGSNNHSEF PWQLQPQPQP SNASSALQET  120
YGVQDHQKKK QELIPREIGT QNNNQSFGSD RQVKVPSYMV SRNSNDGYGW RKYGQKQVKK  180
SENPRSYFKC TYPNCVSKKI VETAFDGQIT EIIYKGGHNH PKPEFTKRPS QSSLPSSVNG  240
RRLFNPASVV SEPHDQSENS SISFEYSDLE QKSFKSEHGE IEDDDEQPAI KRMKREGEDE  300
GMSIEVSRGV KEPRVVVQTI SDIDILVDGF RWRKYGQKVV KGNTNPRSYY KCTYQGCGVR  360
KQVERSAADE RAVLTTYEGR HNHDIPTALR RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-32317386877Probable WRKY transcription factor 4
2lex_A3e-32317386877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g012930.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4183090.0AF418309.1 Arabidopsis thaliana WRKY transcription factor 25 (WRKY25) mRNA, complete cds.
GenBankAY0627200.0AY062720.1 Arabidopsis thaliana putative WRKY-type DNA binding protein (At2g30250; T9D9.6) mRNA, complete cds.
GenBankAY1146500.0AY114650.1 Arabidopsis thaliana putative WRKY-type DNA binding protein (At2g30250) mRNA, complete cds.
GenBankAY1363180.0AY136318.1 Arabidopsis thaliana putative WRKY-type DNA binding protein (At2g30250) mRNA, complete cds.
GenBankBT0084820.0BT008482.1 Arabidopsis thaliana At2g30250 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414287.10.0PREDICTED: probable WRKY transcription factor 25
SwissprotO229210.0WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBLR0HWQ30.0R0HWQ3_9BRAS; Uncharacterized protein
STRINGXP_010414287.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116031733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.10.0WRKY DNA-binding protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]