PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g014730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 312aa    MW: 35217 Da    PI: 10.535
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g014730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-06193216123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ Cg+ F r  +L++Hi   H
  Csa07g014730.1 193 FPCNSCGEIFARTNLLESHIAIkH 216
                     89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.764193221IPR007087Zinc finger, C2H2
PROSITE patternPS000280195216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAARKLGSLL RQYFFSLCFL FLGCFFFPKG ADCKQKRRKK KLRTVSLSSS GSALSSSWTY  60
LKRVFLSTTR ISKSRNQTHP NGADCKQKRR KKKLRTVSLS SSGSALSSSW TYLKRVFLST  120
TRISKSRNQT HPNGTLTSAR SSQNSLVTLV QPETTTTDQP DPATRTQQQP EFEISYSDHN  180
DPLFLLPLRN EIFPCNSCGE IFARTNLLES HIAIKHAVSE LIAGESSTNI VEIIFKSGWP  240
IGKSPEINRI LKIHNSQKIL TRFEEYREFV KAKAARSRWE DERCVADGNE LLQFYCSTFM  300
CDLGQNGXGV K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893RRKKKL
28894RRKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g014730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054965e-82AC005496.3 Arabidopsis thaliana chromosome 2 clone T27A16 map mi54, complete sequence.
GenBankAK2291815e-82AK229181.1 Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL16-47-H24.
GenBankAY0843795e-82AY084379.1 Arabidopsis thaliana clone 106148 mRNA, complete sequence.
GenBankAY1207755e-82AY120775.1 Arabidopsis thaliana unknown protein (At2g29660) mRNA, complete cds.
GenBankBT0084485e-82BT008448.1 Arabidopsis thaliana At2g29660 gene, complete cds.
GenBankCP0026855e-82CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418783.21e-154PREDICTED: uncharacterized protein LOC104704380
TrEMBLR0HTA31e-118R0HTA3_9BRAS; Uncharacterized protein
STRINGXP_010418783.11e-151(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.13e-95C2H2 family protein