PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g016250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 233aa    MW: 26001.9 Da    PI: 5.1936
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g016250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-19161194134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C tt Tp+WR+gp+g+ktLCnaCG+++r+ +
  Csa07g016250.1 161 CTHCETTRTPQWREGPRGPKTLCNACGVRFRSGR 194
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.09E-14154217No hitNo description
PROSITE profilePS5011412.756155191IPR000679Zinc finger, GATA-type
SMARTSM004016.4E-17155205IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.8E-15159192IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.27E-16160207No hitNo description
PfamPF003202.7E-17161194IPR000679Zinc finger, GATA-type
PROSITE patternPS003440161186IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSNGSWLPEE DLKVLADNFF DTLVDHMDDF PLENIETADD DEEDRVAGFQ NLGPPPFDVL  60
ASLYTELTCK KQASSSDVSS TVDSSPPDVK VLKVIQSTSP VSVLENTNGS ALSHNQNRIQ  120
RLGAEMSQQL VPDESESETY LSSENSAKNK RKKQKSPARK CTHCETTRTP QWREGPRGPK  180
TLCNACGVRF RSGRLFPEYR PASSPTFVPT VHSNMHRKIV EMRRKDEDQL DT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149159KRKKQKSPARK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g016250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414542.11e-174PREDICTED: putative GATA transcription factor 13 isoform X1
SwissprotQ9SKN67e-86GAT13_ARATH; Putative GATA transcription factor 13
TrEMBLR0FY421e-109R0FY42_9BRAS; Uncharacterized protein
STRINGXP_010414542.11e-173(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28340.11e-77GATA transcription factor 13