PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g016450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 288aa    MW: 31035.7 Da    PI: 8.0661
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g016450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045115137123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++Fs+   L  H  +H
  Csa07g016450.1 115 YECKTCNRTFSSFQALGGHRASH 137
                     99**********99999998887 PP
2zf-C2H213.30.00024191213123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  Csa07g016450.1 191 HECSICGSEFTSGQALGGHMRRH 213
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-12114139IPR007087Zinc finger, C2H2
SuperFamilySSF576677.1E-9114137No hitNo description
PROSITE profilePS5015710.99115142IPR007087Zinc finger, C2H2
SMARTSM003550.063115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576677.1E-9186213No hitNo description
Gene3DG3DSA:3.30.160.608.8E-4189213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-11190214IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.824191218IPR007087Zinc finger, C2H2
SMARTSM003550.019191213IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MMMGQDEVGS DQTQIIKGKR TKRQRSSSTF VVTTATTVTS TSSSAGGSGG RAVSDEYNSA  60
VSSPVTTTDC TQEEEDMAIC LIMLARGTVL PLPDLKKSRK AHQKISSEDS SFYVYECKTC  120
NRTFSSFQAL GGHRASHKKP RTSTDEKARS PLMQPKSSAS EEGQNSPFKV SGSALASQAS  180
NIIINKANKV HECSICGSEF TSGQALGGHM RRHRTAVPAV SPVAATAEVS RNSTEEEIEI  240
SLSRSMEQQR KYLPLDLNLP APEDDLRESK FQGIVFSATP ALIDCHY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g016450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0058510.0AC005851.3 Arabidopsis thaliana chromosome 2 clone F24D13 map B68, complete sequence.
GenBankAC0062020.0AC006202.4 Arabidopsis thaliana chromosome 2 clone T3B23 map mi54, complete sequence.
GenBankAK1754930.0AK175493.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-92-D09.
GenBankAK2298120.0AK229812.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-88-O10.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414581.10.0PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X40.0ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A178VUQ31e-179A0A178VUQ3_ARATH; Uncharacterized protein
STRINGXP_010414581.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-163C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]