PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g017420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 210aa    MW: 23186 Da    PI: 8.464
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g017420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.9e-1191138455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Csa07g017420.1  91 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 138
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.08E-985142No hitNo description
SuperFamilySSF474593.66E-1885156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1887155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.82887137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-891138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1093143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSHALSQAVI EGISGAWKRR EDESKSAKIV VSANGASEGE NKRQKKIDEL SEGKGEAGSP  60
GGTETEQKKQ QIEPSKDYIH VRARRGQATD SHSLAERARR EKISERMKIL QDLVPGCNKV  120
IGKALVLDEI INYIQSLQRQ VEFLSMKLEA VNSRMNPGIE AFPPKESGQQ AFENPEMQFG  180
SQSTREYSRG ASPEWLHMQI GSGGFERTS*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g017420.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2697530.0AM269753.1 Arabidopsis thaliana mRNA for basic helix loop helix protein (bpe gene), BPE normal splice form.
GenBankAY0863730.0AY086373.1 Arabidopsis thaliana clone 24644 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414685.11e-152PREDICTED: transcription factor BPE-like, partial
SwissprotQ0JXE71e-100BPE_ARATH; Transcription factor BPE
TrEMBLR0GIP91e-138R0GIP9_9BRAS; Uncharacterized protein
STRINGXP_010414685.11e-152(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-136BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]