PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g019200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 717aa    MW: 74673.6 Da    PI: 10.405
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g019200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.21.4e-11158202144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W+ eEde l+ avk++G g+W++Ia++     Rt+ q+  rw
   Csa07g019200.1 158 RKKWSSEEDEELIAAVKRHGEGSWALIAKEEFeGERTPSQLSQRW 202
                      789*************************99777789999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-15152206IPR009057Homeodomain-like
PROSITE profilePS5129416.991153210IPR017930Myb domain
SuperFamilySSF466893.09E-12154208IPR009057Homeodomain-like
SMARTSM007171.6E-10157208IPR001005SANT/Myb domain
PfamPF002492.0E-9158202IPR001005SANT/Myb domain
CDDcd116601.52E-13159202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MVDKSTNNKK RLEFISEEDI ATLLQREYQL LWRHLAYRDS LLPVEDNAQL LNDDSDMECE  60
LEASPAVSVD VVTEAVAHVK VMTASYVPSE SDIPEDSTVE APMTINIPYG LYRGAQEPSD  120
SYWSSRGMNI TFPVSLPKAA EGHTGNGLPS SMAPRKRRKK WSSEEDEELI AAVKRHGEGS  180
WALIAKEEFE GERTPSQLSQ RWGAIRRRCD TSNTSTQTGL QRTEAQMAAN RALSLAVGNR  240
IPAKKLAVGT PPLPSSGTIT GAQANGANSG TLQSQQKSQP QVQALPRAAT PAPTAKSRVP  300
AKKTTTNSTS RAALVTANSV AAAACMSGLA TAVSVPKTEP GKNAVSVLVP KVEPVKTSST  360
ASLPRPSGIS SALNAEPVKA ASAASVPRPS GIISVPKAET VKTAASAASL LRLSGIIPAP  420
KPEPVKTTTS AASRPSGIQS APKAEPVKPA APAASGPRPG MILAPNAEPL KPASAASLPR  480
PPGIISAPKA EPVKAAPAAS VPRPSNILSA PKADPVKSVS AIASNTKSFG TLNSRHAVNG  540
SPNHTISSSP PNKPSLMAPL SKGSTIQNNS VPPSFASSRL VSTQRIPATT LMPPKPSVGA  600
AVNTFAKPVG VQKEQSQGNR TSPLVTTTLP ANKTFPTNSV ISTSKVETPP SLMPKKNQVV  660
DICTDKSSLD KPPEKESITT ASTLVVATAE SKSKDEASNR ESQDVAAVTG TRQKEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g019200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171280.0AK117128.1 Arabidopsis thaliana At1g58220 mRNA for putative MYB-family transcription factor, complete cds, clone: RAFL16-66-J10.
GenBankAY5195470.0AY519547.1 Arabidopsis thaliana MYB transcription factor (At1g58220) mRNA, complete cds.
GenBankBT0059710.0BT005971.1 Arabidopsis thaliana At1g58220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418881.10.0PREDICTED: uncharacterized protein KIAA0754-like, partial
TrEMBLA0A178WGD30.0A0A178WGD3_ARATH; Uncharacterized protein
STRINGXP_010418881.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein