PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g030470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 187aa    MW: 21288.4 Da    PI: 10.5359
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g030470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-171057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll +++ ++G g W+ ++ + g++R++k+c++rw +yl
   Csa07g030470.1 10 KGAWTPEEDSLLRQCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWVNYL 57
                     79********************************************97 PP
2Myb_DNA-binding52.61e-1663107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +T +E +ll++++k+lG++ W++Ia +++ gRt++++k++w++ 
   Csa07g030470.1  63 RGEFTSDEIDLLLRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTN 107
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.69561IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-23660IPR009057Homeodomain-like
SuperFamilySSF466891.65E-297104IPR009057Homeodomain-like
SMARTSM007178.3E-15959IPR001005SANT/Myb domain
PfamPF002496.4E-161057IPR001005SANT/Myb domain
CDDcd001679.15E-111257No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2261111IPR009057Homeodomain-like
PROSITE profilePS5129418.05362112IPR017930Myb domain
SMARTSM007171.0E-1562110IPR001005SANT/Myb domain
PfamPF002493.9E-1563108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDRSAKGLKK GAWTPEEDSL LRQCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWVNYLNPN  60
INRGEFTSDE IDLLLRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTNLAK KQESRLRSKT  120
RNREAACSDA TPAQKHNVIR PRPRSFSNNN WSISVNDLSE VGIGEVISTK YGCITSKLLL  180
QDICLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2481145110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g030470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419010.11e-132PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV95e-74MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0D3CYD93e-79A0A0D3CYD9_BRAOL; Uncharacterized protein
TrEMBLE5D8F43e-79E5D8F4_BRAOB; MYB2
STRINGXP_010419010.11e-132(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56650.11e-71production of anthocyanin pigment 1
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]