PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g030810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 202aa    MW: 22754.5 Da    PI: 4.8272
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g030810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.72.7e-09801222059
                     S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +sYYrC++a   +C+++k+v+  ++ p v  +tY g+H ++
  Csa07g030810.1  80 SKKSYYRCAYAkehNCNATKRVQMIQDCPPVYRTTYMGQHICK 122
                     679******998999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.2E-776123IPR003657WRKY domain
PfamPF031061.7E-1078122IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.6E-1078123IPR003657WRKY domain
SuperFamilySSF1182903.27E-1079122IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MFSNIDHKAL ASLLHGQGCA NSLKTLLDNR EISSVLIEPL VNTILDSFSL ALSFVDSPSP  60
PLHHESSSQN MAALVPQRSS KKSYYRCAYA KEHNCNATKR VQMIQDCPPV YRTTYMGQHI  120
CKSIPVYDDT YGSEMIQFDQ VVSESVMPLF TSTDHEAITI QDKATDHTMN QECDINDFLV  180
DYDQFWRNEF PSFSYGDSVF S*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g030810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470533.11e-134PREDICTED: probable WRKY transcription factor 63
SwissprotQ9C6H59e-90WRK63_ARATH; Probable WRKY transcription factor 63
TrEMBLR0GDS11e-115R0GDS1_9BRAS; Uncharacterized protein
STRINGXP_010415204.11e-141(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.18e-87WRKY DNA-binding protein 64
Publications ? help Back to Top
  1. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]