PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g032560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 349aa    MW: 39334.5 Da    PI: 4.6066
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g032560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.75.9e-40832282128
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssas 83 
                     a+kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aike ++              + + ++e+e+e++++   
  Csa07g032560.1  83 AVKKDRHSKIHTAQGLRDRRVRLSIGVARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEVVQEkklnngnedfednGGDVEEEVEEEEEEE--- 174
                     89**************************************************************7776665544443222222332222222... PP

             TCP  84 nsssg................kaaksaakskksqksaasalnlakesrakarararertre 128
                         +                ++   + k+ +++k+   +++l++ s++ +r +a+er+r+
  Csa07g032560.1 175 ----EdgdnslvygsspesrgEKVVCEVKKADKRKK---NNELSNISSKGSRDNAKERSRK 228
                     ....12333455677775443444444444444444...4555555555555555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.1E-3984230IPR005333Transcription factor, TCP
PROSITE profilePS5136935.28685143IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MMSSSNKDGN NHGVYPLSLY LSSLPGHQDI IRNPYNQQLT PSPSQMVSAV PKSLIDYMPF  60
NSNDAVNQQG FELPAVSREI KKAVKKDRHS KIHTAQGLRD RRVRLSIGVA RQFFDLQDML  120
GFDKASKTLD WLLKKSRKAI KEVVQEKKLN NGNEDFEDNG GDVEEEVEEE EEEEEDGDNS  180
LVYGSSPESR GEKVVCEVKK ADKRKKNNEL SNISSKGSRD NAKERSRKMA YDNPETVSDI  240
TQSETLDSFK RSIFSNEGED MTPFFYKETI EEFGNQESIS TKMKINMPTN MDQSYNQDTG  300
AFMLIDQGSS SNYSTIDLPL LDYNYEQNPF VDQTFCAVTD TSFPGGLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-1490143154Putative transcription factor PCF6
5zkt_B9e-1490143154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g032560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083210.10.0PREDICTED: transcription factor TCP1-like
SwissprotQ9FYG71e-151TCP1_ARATH; Transcription factor TCP1
TrEMBLR0GHY51e-178R0GHY5_9BRAS; Uncharacterized protein
STRINGXP_010415290.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-140TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]