PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g032730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 251aa    MW: 28124.2 Da    PI: 4.3911
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g032730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.93e-091350239
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    +ie k    v f kRr+g+  KA+ L+ L da +a+i 
  Csa07g032730.1 13 KIERKDPPAVAFFKRRKGLYSKASQLCLLSDAHIAIIA 50
                    678888889**************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-4167IPR002100Transcription factor, MADS-box
CDDcd002668.25E-16582No hitNo description
PROSITE profilePS5006611.1991249IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-111279IPR002100Transcription factor, MADS-box
PfamPF003195.3E-91359IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGGLKSKIDT GKKIERKDPP AVAFFKRRKG LYSKASQLCL LSDAHIAIIA SPVSSNSHAS  60
FYTFGHSSVD SVVAAFLADQ TPLRDDDERK MLHDLKELEK KQRDRVDVEK EKGVLHVTHQ  120
QQTLDHQPCS SSSLCVEVDD VYVNVQGFHN NNTKEQQALA VSVYNNNLVG SFSEELDVDD  180
KIFDCETKPE FLWENLEMDD LTVNVQGFQN NIDEEQTLAN DDGLLGSFDG CNQEFDLDQL  240
FDFVTKSEDL *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g032730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511682.12e-94PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6334e-62AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A178W5096e-59A0A178W509_ARATH; AGL97
STRINGXP_010511682.18e-94(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.12e-64AGAMOUS-like 97
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]