PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g034230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 340aa    MW: 36902.2 Da    PI: 4.4509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g034230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.6e-17131177252
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52 
                     +  GVr++k +g+W+AeIr+p        +r++lg+f+t e+Aaka++  + +
  Csa07g034230.1 131 KPVGVRQRK-WGKWAAEIRHP-----IakTRIWLGTFDTLEDAAKAYDLKKIE 177
                     789*****9.**********8.....447*******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.31E-22130178No hitNo description
PROSITE profilePS5103218.61131190IPR001471AP2/ERF domain
SMARTSM003801.8E-18131191IPR001471AP2/ERF domain
PfamPF008472.8E-11131178IPR001471AP2/ERF domain
PRINTSPR003679.2E-8132143IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16133178IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-21134178IPR001471AP2/ERF domain
PRINTSPR003679.2E-8154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVEVRKVQSL SGTTTTSGGE MKKRAKRNTL SLSSSESLPH ETQPLRKVRI IVNDPYATDD  60
SSSDEEEFMI VPKPRKVKRI VREINFPSME VVSEQQPSQS SSQDSTKTVN KKAAAGSSSA  120
TPACPKVVTK KPVGVRQRKW GKWAAEIRHP IAKTRIWLGT FDTLEDAAKA YDLKKIEFDA  180
LVAKPAVSSS ETSQCSRSSP VVPVEQDDTS ASALTCVNNT TVEVSKEEIV APTPTPNAAG  240
GNKEVLFDFD FTDLQIPDLG FFADGPNGND LDFDSLLNDD QFDGFGLLDD IQGFEDDGPR  300
ELPDFDFADV EELADSSFGF LDQLAPLNIG CPLKSFAAS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g034230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415475.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_010415477.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
SwissprotQ9CA271e-157EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLR0GF660.0R0GF66_9BRAS; Uncharacterized protein
STRINGXP_010415475.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-122ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]