PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g034480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 139aa    MW: 16267.6 Da    PI: 10.4649
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g034480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.64.9e-1245105363
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     + ++ rrk +NRe+ArrsR RK+  +eeL     +L +eNk L +el++ k+  +k+  e+
  Csa07g034480.1  45 DERKRRRKVSNRESARRSRMRKRRHMEELWSMLVQLINENKCLVDELSRAKEGLEKVIEEN 105
                     5578899*********************************************999887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.0E-1038101No hitNo description
SMARTSM003386.5E-1343107IPR004827Basic-leucine zipper domain
PfamPF077161.4E-94494IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.79545108IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.06E-104796No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MAGFVYNLQS ANPNPQSLFQ TFVDRVPLVN LVATSDDSSR SAEDDERKRR RKVSNRESAR  60
RSRMRKRRHM EELWSMLVQL INENKCLVDE LSRAKEGLEK VIEENMKIRE ENSKSRKMIG  120
EIRLNRFLNV DGDKIWTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14650RKRRR
24967RRKVSNRESARRSRMRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g034480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935281e-128AB493528.1 Arabidopsis thaliana At1g68880 mRNA for hypothetical protein, partial cds, clone: RAAt1g68880.
GenBankAC0116651e-128AC011665.8 Arabidopsis thaliana chromosome 1 BAC T6L1 genomic sequence, complete sequence.
GenBankAC0119141e-128AC011914.9 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence.
GenBankAF4006211e-128AF400621.1 Arabidopsis thaliana transcription factor-like protein bZIP8 mRNA, complete cds.
GenBankBT0248171e-128BT024817.1 Arabidopsis thaliana At1g68880 gene, complete cds.
GenBankCP0026841e-128CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415508.13e-96PREDICTED: basic leucine zipper 8
SwissprotQ9CA463e-79BZIP8_ARATH; Basic leucine zipper 8
TrEMBLA0A178WI504e-76A0A178WI50_ARATH; BZIP
STRINGXP_010415508.11e-95(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150351619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68880.12e-55basic leucine-zipper 8
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]