PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g034650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 232aa    MW: 26390.9 Da    PI: 4.8922
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g034650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind30.68.9e-101787290
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHH.HHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
    HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQ.LnmYgFkkvkdeekkskskekiweFkhksFkkgk 90
                    F ++lye+++d+++++++swse+g+sfvv+d + f k            a F++  L+  gF+kv+++++k       we++ ++F +g+
  Csa07g034650.1 17 FRSQLYEMVDDPSTDSIVSWSESGKSFVVWDDSGFLK------------AGFMKEiLEHVGFRKVEESDQK-------WEYACDYFVRGQ 87
                    6789***************************999987............4444432566677777777766.......777777777666 PP
2HSF_DNA-bind58.61.6e-18128211290
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                     F +k+y++++d+++++++swse+g+sf++++e+ef ++vLp+  +F   +++SF R L + g++kv++++++       weF+ +++ +g+
  Csa07g034650.1 128 FKRKMYDMVDDPSTDSIVSWSESGKSFIIWKETEFLRDVLPQhvFFLRYEMTSFARWLYVMGYRKVEESSHQ-------WEFAGDYLVRGE 211
                     779**************************************96669************************99.......**9988887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.8E-812113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.65E-121790IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-81789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-131790IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.9E-23120212IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-15124214IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.3E-17126213IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-16128212IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-7128151IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-7181193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDGGDSNGDP MTLGSFFRSQ LYEMVDDPST DSIVSWSESG KSFVVWDDSG FLKAGFMKEI  60
LEHVGFRKVE ESDQKWEYAC DYFVRGQPGL TPPSDICGGP VLTPGYLRKI EIKKRSGTGR  120
KQRRPSLFKR KMYDMVDDPS TDSIVSWSES GKSFIIWKET EFLRDVLPQH VFFLRYEMTS  180
FARWLYVMGY RKVEESSHQW EFAGDYLVRG EPGEPDLPTP PCTPGGIMIT P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g034650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415521.11e-170PREDICTED: heat stress transcription factor A-9-like
TrEMBLA0A3P6D5134e-69A0A3P6D513_BRACM; Uncharacterized protein
STRINGXP_010415521.11e-169(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.19e-38HSF family protein