PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g036300.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 141aa    MW: 16220.8 Da    PI: 7.253
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g036300.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.2e-1672117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+  G+ +W++Ia++++ gR++k+c++rw++ 
   Csa07g036300.1  72 RGHWRPAEDAKLKELVAVCGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 117
                      899*****************************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.40667122IPR017930Myb domain
SuperFamilySSF466891.23E-1868132IPR009057Homeodomain-like
SMARTSM007173.7E-1371120IPR001005SANT/Myb domain
PfamPF002496.9E-1672117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2673135IPR009057Homeodomain-like
CDDcd001676.58E-1275116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MSEDHHRLMD QISSSDHFSL NINNDQHLHR YPTSHREEEI RNSYLSDYSN CSKKDTADYG  60
SSGHSSKASV SRGHWRPAED AKLKELVAVC GPQNWNLIAE KLQGRSGKSC RLRWFNQLDP  120
RINRRAFTEE EEEKLYIASS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-1472138470C-Myb DNA-Binding Domain
1msf_C5e-1472138470C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g036300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2493081e-131AF249308.1 Arabidopsis thaliana putative transcription factor (MYB105) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300946.22e-76LOW QUALITY PROTEIN: transcription factor MYB105
SwissprotQ9SEZ42e-73MY105_ARATH; Transcription factor MYB105
TrEMBLD7KXG81e-75D7KXG8_ARALL; MYB105
TrEMBLR0HVG49e-76R0HVG4_9BRAS; Uncharacterized protein
STRINGXP_010419102.14e-96(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-65myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]