PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g036320.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 683aa MW: 76519.6 Da PI: 6.7184

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g036320.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.9	8.1e-32	33	87	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl Csa07g036320.1 33 KPRLKWTCDLHHRFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRL 87 79****************************************************8 PP
2	G2-like	100.9	8.1e-32	375	429	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl Csa07g036320.1 375 KPRLKWTCDLHHRFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRL 429 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	8.272	30	90	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.9E-28	31	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.29E-14	32	87	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-21	33	88	IPR006447	Myb domain, plants
Pfam	PF14379	1.5E-22	137	183	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
PROSITE profile	PS51294	8.272	372	432	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.9E-28	373	430	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.29E-14	374	429	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-21	375	430	IPR006447	Myb domain, plants
Pfam	PF14379	1.5E-22	479	525	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence Send to blast
MCLLMEINNN ASDNSNSINH KAKMSLVLST DAKPRLKWTC DLHHRFIEAV NQLGGPNKAT 60 PKGLMKVMEI PGLTLYHLKS HLQKYRLGKS MKFDDNKLEA VSSASENQEA ESNNDSRDLR 120 GCSVSEGNSN PTKEGLQITE ALKMQMEVQK KLHEQIEVQR HLQVKIEAQG KYLQSVLVKA 180 QQTLAGYTSS TLGMEFARTE LSRLASMVNR GCPSSSFSEL TQAEEEEETE EGFLWRKKPN 240 NRGISQLRCS VESSLTSSET SETKLDENNN INKTIELPLM EIKSEVMKGN KRSFNDVVCV 300 EQQPLMKRVF GVDDDEHLKL SLNSYKKDME TCPNIGLGLG GEGRLVDAIN NNANDNSNSI 360 NHKAKMSLVL STDAKPRLKW TCDLHHRFIE AVNQLGGPNK ATPKGLMKVM EIPGLTLYHL 420 KSHLQKYRLG KSMKFDDNKL EAVSSASENQ EAESNNDSRD LRGCSVSEGN SNPTKEGLQI 480 TEALKMQMEV QKKLHEQIEV QRHLQVKIEA QGKYLQSVLV KAQQTLAGYT SSTLGMEFAR 540 TELSRLASMV NRGCPSSSFS ELTQAEEEEE TEEGFLWRKK PNNRGISQLR CSVESSLTSS 600 ETSETKLDEN NNINKTIELP LMEIKSEVMK GNKRSFNDVV CVEQQPLMKR VFGVDDDEHL 660 KLSLNSYKKD METCPNIGLG FN*

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence Send to blast

MCLLMEINNN ASDNSNSINH KAKMSLVLST DAKPRLKWTC DLHHRFIEAV NQLGGPNKAT  60
PKGLMKVMEI PGLTLYHLKS HLQKYRLGKS MKFDDNKLEA VSSASENQEA ESNNDSRDLR  120
GCSVSEGNSN PTKEGLQITE ALKMQMEVQK KLHEQIEVQR HLQVKIEAQG KYLQSVLVKA  180
QQTLAGYTSS TLGMEFARTE LSRLASMVNR GCPSSSFSEL TQAEEEEETE EGFLWRKKPN  240
NRGISQLRCS VESSLTSSET SETKLDENNN INKTIELPLM EIKSEVMKGN KRSFNDVVCV  300
EQQPLMKRVF GVDDDEHLKL SLNSYKKDME TCPNIGLGLG GEGRLVDAIN NNANDNSNSI  360
NHKAKMSLVL STDAKPRLKW TCDLHHRFIE AVNQLGGPNK ATPKGLMKVM EIPGLTLYHL  420
KSHLQKYRLG KSMKFDDNKL EAVSSASENQ EAESNNDSRD LRGCSVSEGN SNPTKEGLQI  480
TEALKMQMEV QKKLHEQIEV QRHLQVKIEA QGKYLQSVLV KAQQTLAGYT SSTLGMEFAR  540
TELSRLASMV NRGCPSSSFS ELTQAEEEEE TEEGFLWRKK PNNRGISQLR CSVESSLTSS  600
ETSETKLDEN NNINKTIELP LMEIKSEVMK GNKRSFNDVV CVEQQPLMKR VFGVDDDEHL  660
KLSLNSYKKD METCPNIGLG FN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-19	32	431	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-19	32	431	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-19	32	431	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-19	32	431	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-19	32	431	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-19	32	431	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-19	32	431	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-19	32	431	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g036320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT029516	0.0	BT029516.1 Arabidopsis thaliana At1g69580 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010415614.1	0.0	PREDICTED: myb family transcription factor PHL8-like isoform X3
Swissprot	F4I274	0.0	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	R0IB87	0.0	R0IB87_9BRAS; Uncharacterized protein
STRING	XP_010415611.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	0.0	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]