PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g037100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 81aa    MW: 9283.39 Da    PI: 10.4676
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g037100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.92.3e-102393775
                    EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT-- CS
              B3 37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLk 75
                    ++++ +grsWev +  +k+++  ++ ++GW++Fvk+n L 
  Csa07g037100.1  2 KIRTHWGRSWEVAI--SKNPRFyFMEKSGWEKFVKDNALG 39
                    78899*********..******555569*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023622.1E-8139IPR003340B3 DNA binding domain
PROSITE profilePS508638.713162IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-7240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-7239IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MKIRTHWGRS WEVAISKNPR FYFMEKSGWE KFVKDNALGH SRIKTEQRRG SAYNDVKKEE  60
VVSPELSNRG PTREAESNGG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g037100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467314.12e-39PREDICTED: B3 domain-containing protein At2g16210-like
SwissprotQ5BPT75e-22Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLR0G9A53e-35R0G9A5_9BRAS; Uncharacterized protein
STRINGXP_010489167.14e-37(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.23e-25B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]