PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g037940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 198aa    MW: 22287.2 Da    PI: 10.2827
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g037940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-153882248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++++++Ed+l+++++++lG++ W++Ia +++ gRt+++++ +w +yl
   Csa07g037940.1 38 NNFSKDEDDLILKLHALLGNR-WALIAGRLP-GRTDNEVRIHWETYL 82
                     689******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.36E-151891IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-192887IPR009057Homeodomain-like
PROSITE profilePS5129421.133186IPR017930Myb domain
SMARTSM007171.3E-143684IPR001005SANT/Myb domain
PfamPF002491.1E-143882IPR001005SANT/Myb domain
CDDcd001671.78E-123982No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MNKIPLRAPS SPSGMQHRGK RFRLRGRNYV RPEVKQSNNF SKDEDDLILK LHALLGNRWA  60
LIAGRLPGRT DNEVRIHWET YLRRKLIKMG IDPTNHRLHH HTSYISRRYV KSSHKEHETK  120
IISDQSSSVS ESCGITFLPI SCTNCSEDSN STGQSRLPDL NIGLIPTPTS LPGRCLQDSS  180
ESSKNGSTGQ ETLLLFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-15198642108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g037940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3706090.0AF370609.1 Arabidopsis thaliana putative transcription factor (F23N20.2) mRNA, complete cds.
GenBankAY0482310.0AY048231.1 Arabidopsis thaliana At1g71030/F23N20_2 mRNA, complete cds.
GenBankAY0870930.0AY087093.1 Arabidopsis thaliana clone 31592 mRNA, complete sequence.
GenBankAY0916970.0AY091697.1 Arabidopsis thaliana At1g71030/F23N20_2 mRNA, complete cds.
GenBankAY5195190.0AY519519.1 Arabidopsis thaliana MYB transcription factor (At1g71030) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415799.11e-144PREDICTED: myb-related protein 308
TrEMBLQ9C9A51e-108Q9C9A5_ARATH; At1g71030/F23N20_2
STRINGXP_010415799.11e-144(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.11e-111MYB-like 2