PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g038500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 150aa    MW: 16302.8 Da    PI: 4.5483
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g038500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37.1e-171363155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+ykG+r++k +g+Wv+eIr+p +   r+r +lg+f tae+Aa a++ a  +l+ 
  Csa07g038500.1 13 SKYKGIRRRK-WGKWVSEIRVPGT---RQRLWLGSFSTAEGAAVAHDVAFYCLHR 63
                    89*****998.**********943...5*********************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-171373IPR016177DNA-binding domain
CDDcd000186.84E-261375No hitNo description
PfamPF008471.3E-81361IPR001471AP2/ERF domain
SMARTSM003804.3E-271481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-241476IPR001471AP2/ERF domain
PROSITE profilePS5103220.7451475IPR001471AP2/ERF domain
PRINTSPR003675.3E-91526IPR001471AP2/ERF domain
PRINTSPR003675.3E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDSSRDAGET YQSKYKGIRR RKWGKWVSEI RVPGTRQRLW LGSFSTAEGA AVAHDVAFYC  60
LHRPSTLDDE SFNFPQLLPT SLASTTSPKS IQKAASDAGL AVDAGFNLNN DGAVSGSGGT  120
YEDRSPTADM EDESELSISV YDYLEDDHV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g038500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161621e-110AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161631e-110AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankBT0109991e-110BT010999.1 Arabidopsis thaliana At1g71520 gene, complete cds.
GenBankBT0148161e-110BT014816.1 Arabidopsis thaliana At1g71520 gene, complete cds.
GenBankCP0026841e-110CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415862.11e-108PREDICTED: ethylene-responsive transcription factor ERF020
SwissprotQ9C9I84e-83ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLR0IDS03e-90R0IDS0_9BRAS; Uncharacterized protein
STRINGXP_010415863.11e-107(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.12e-85ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]