PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g039440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 229aa    MW: 25830.7 Da    PI: 9.1451
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g039440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.71.1e-2152100149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                     k ie + +rqvtfskRr g++KKA ELSvLC+a++ +i fs  +++y +
  Csa07g039440.1  52 KEIEVENRRQVTFSKRRSGLFKKAAELSVLCGAQIGIITFSRCDRIYSF 100
                     679999************************************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-2744103IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-2344114IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.63744104IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-204666IPR002100Transcription factor, MADS-box
PfamPF003194.6E-2254100IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-206681IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-2081102IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEDVGEASTM ITCLPPAKQK PLRNPNLLAN QKKETTLKKP RTTKGRQKIE IKEIEVENRR  60
QVTFSKRRSG LFKKAAELSV LCGAQIGIIT FSRCDRIYSF GNVDTLVDKY IRKTPVMLRS  120
NPGGDVAAGG ENNDGLMWWE RAVESVPEED MEEYKMALSV LRENLMTRIS QISNDRMVEN  180
LPAFPNEMAM ADWKLSNENM MARNDRSYLG NDAGLDLAVP FMSPKPRQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g039440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0165291e-172AC016529.7 Arabidopsis thaliana chromosome 1 BAC T10D10 genomic sequence, complete sequence.
GenBankAY1412351e-172AY141235.1 Arabidopsis thaliana MADS-box protein AGL60 mRNA, complete cds.
GenBankBT0256471e-172BT025647.1 Arabidopsis thaliana At1g72350 mRNA, complete cds.
GenBankCP0026841e-172CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464211e-172DQ446421.1 Arabidopsis thaliana clone pENTR221-At1g72350 MADS-box protein (At1g72350) mRNA, complete cds.
GenBankDQ6529291e-172DQ652929.1 Arabidopsis thaliana clone 0000018934_0000013069 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419165.11e-169PREDICTED: MADS-box transcription factor 23-like
TrEMBLR0ICD31e-129R0ICD3_9BRAS; Uncharacterized protein
STRINGXP_010419165.11e-169(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.11e-119M-type_MADS family protein