PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g039690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 151aa    MW: 17409 Da    PI: 9.479
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g039690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.9e-163889155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Csa07g039690.1 38 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 89
                    78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-183898IPR016177DNA-binding domain
CDDcd000181.29E-253899No hitNo description
PfamPF008475.6E-113889IPR001471AP2/ERF domain
SMARTSM003801.2E-3239103IPR001471AP2/ERF domain
PROSITE profilePS5103219.0723997IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-193997IPR001471AP2/ERF domain
PRINTSPR003675.4E-54051IPR001471AP2/ERF domain
PRINTSPR003675.4E-57999IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MNRQEFVAML RSYILNQSFD MKFPYHIGIV VGFWRGASVY RGVTRHHQHG RWQARIGRVA  60
GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDINR YDVKRYIACS LNICLHVYVS  120
MYANCFKYLV DDEVVVYSFI KIGSIPHSHR *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g039690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6034174e-90AY603417.1 Arabidopsis thaliana AP2/EREBP transcription factor (At1g72570) mRNA, complete cds.
GenBankDQ4464224e-90DQ446422.1 Arabidopsis thaliana clone pENTR221-At1g72570 ovule development protein (At1g72570) mRNA, complete cds.
GenBankDQ6529304e-90DQ652930.1 Arabidopsis thaliana clone 0000013270_0000009577 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428147.21e-49PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE12e-49AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A178WFN24e-47A0A178WFN2_ARATH; Uncharacterized protein
TrEMBLR0HWY23e-47R0HWY2_9BRAS; Uncharacterized protein
STRINGXP_010428147.14e-48(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.15e-47AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]