PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g039840.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 293aa MW: 32325.9 Da PI: 9.6405

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g039840.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.7	4.2e-11	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+e l+ +++++G g Wk I r +R+ ++k++w+++ Csa07g039840.1 5 KLKWTGEEEEALLAGIAKHGAGKWKNILRDPEfskklINRSNIDLKDKWRNL 56 689*****************************99989*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.267	1	62	IPR017930	Myb domain
SuperFamily	SSF46689	6.46E-15	3	60	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-7	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-7	5	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-13	5	56	IPR009057	Homeodomain-like
CDD	cd11660	3.82E-20	7	56	No hit	No description
SuperFamily	SSF46785	6.8E-14	125	208	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	2.7E-14	126	191	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.6E-9	127	196	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	21.076	128	196	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	3.1E-7	130	189	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MGNQKLKWTG EEEEALLAGI AKHGAGKWKN ILRDPEFSKK LINRSNIDLK DKWRNLSIAP 60 GTQGSTNRAR PTRVKEEEGV TPPPVETDEK TTPPPPIVNP FIPPVPPLLR KKSIELITDQ 120 SGSVDTKNVP RYDGMIFEAL SALADANGSD VSSIFHFIEP RHEVPPNFRR VLSSRLRRLA 180 TQSKLVKLQN FYKIPDPSGT RTTPAPKPKE THTKSRQSNN HQASAISLQM IEEAAITAAC 240 KVVEAENKID IAKAAGEEFE KMTKLAEGTE HLLVIANEIH EKCSRGEVVL LA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00652	PBM	Transfer from LOC_Os01g51154	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g039840.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010416038.1	0.0	PREDICTED: telomere repeat-binding factor 5-like isoform X2
Swissprot	F4IEY4	1e-132	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	R0IFA6	1e-143	R0IFA6_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010416037.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2321	28	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	1e-116	MYB_related family protein

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]