PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g039940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YA
Protein Properties Length: 524aa    MW: 59184.5 Da    PI: 10.7744
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g039940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.42.1e-32192248158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  Csa07g039940.1 192 NEPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 248
                     59****************************.**************************9 PP
2CBFB_NFYA89.44.8e-28366416758
       CBFB_NFYA   7 NaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     NaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  Csa07g039940.1 366 NAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 416
                     ************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.7E-38190251IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.735191251IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-26193248IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-23194216IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860196216IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.7E-23225248IPR001289Nuclear transcription factor Y subunit A
SMARTSM005211.3E-31358419IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.436359419IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.4E-23366416IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MIFLGCLRRR RFVMMHQMNK KDSATHSTLP YLNTSISWGL VPPTDSNVVN RRGSTDSLSL  60
KVDSRPGHVQ TTKQISFQDQ DSSSTQSTGQ SYTEVASSGD DNPSRQISFS AKSGSEETQR  120
KGFATNPKSG SMTAYPNIHF APAQPNFSYH YADPHFGGLL ATTYLPHPQT CNPQMVGTVQ  180
GRVPLPGELT ENEPVFVNAK QYHAIMRRRQ QRAKLEAQNK LIKARKPYLH ESRHVHALKR  240
PRGSGGRFLN TKKLLQESEQ AAAAREEEND KSGQRDNKKA NMSRFEARML HNSKDRSSTT  300
SGXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXNAKQY HAIMRRRQQR AKLEAQNKLI KARKPYLHES RHVHALKRPR GSGGRFLNTK  420
KLLQESEQAA AAREEENDKS GQRDNKKANM SRFEARMLHN SKDRSSTTSG SDITSVSDSA  480
DIFGHTDFQF SGFPTQTNRA MLVHGQSNDM HGGGDMHHFS VHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-19192420262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g039940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1400280.0AY140028.1 Arabidopsis thaliana CCAAT-binding factor B subunit-like protein, putative (At1g72830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083320.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
SwissprotQ93ZH21e-171NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLR0GCV40.0R0GCV4_9BRAS; Uncharacterized protein
STRINGXP_010416050.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-154nuclear factor Y, subunit A3