PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g047860.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 743aa MW: 85913.2 Da PI: 7.2734

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g047860.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.1	9.4e-26	12	97	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ dgkw+v+++++eHnH+l p Csa07g047860.1 12 YYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRPSPKIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLP 97 8**************************************99887....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-23	12	97	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.6E-27	221	313	IPR018289	MULE transposase domain
Pfam	PF04434	2.7E-9	499	533	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.546	499	535	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	510	537	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence Send to blast
MEFETHEDAY LYYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP 60 RPSPKIGCKA SMHVKRRPDG KWYVYSFVKE HNHDLLPEQA HFFRSHRNNN NNNTEPVKSN 120 DAQRFRRKKN SPLADCKHLS AYNDLDFING YMRNQHDKGR RLVLDDGGGG DAQILLEFLM 180 RMQEENPKFF FAVDFSEDHL LRNVFWVDAK GIEDYKSFSD VVSFDTTYFV SKYKVPLVLF 240 IGVNHHVQPV LLGCGLVADD TVYTYVWLMQ SWLVAMGGQK PKVMLTDQNN AIKAAVAAVL 300 TETRHCYCLW HVLEQLPRNL DYWSMWQDTF MKKLFKCIYK SWSEEEFDRR WLKLIDKFHL 360 RDVQWMRCLY DERKFWAPTF MRGVTFAGLS TRYRSESVNS LFDRYVHIET SLKEFLEGYG 420 VMLEDRYEEE AKADFDAWHE APELKSPSPF EKQMLLVYTH EIFRKFQLEV LGAAACHLTK 480 ESEEGTTYSV KDFDDDQKYL VDWDEFKSDI YCSCRSFEYK GYLCRHAIVV LQMSGVFTIP 540 INYVLQRWTN AARNRHQISG NLELVQTNIR RFNDLCRRAI ILGEEGSLSQ ESYDIAMLAM 600 KEAFKQCAIK FNTIEHPARC EEAAIQAGDS VQGGNQYGST MTQIGLEPNN IHASNAPVQA 660 ETRREKRSSV NNTSKKSKHM TQSETTVGEA SQEAFQHVAA PRSLQAVAGQ FHNTMPGIFQ 720 NVIPTEFHNL PATNMHQNNP PG*

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence Send to blast

MEFETHEDAY LYYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP  60
RPSPKIGCKA SMHVKRRPDG KWYVYSFVKE HNHDLLPEQA HFFRSHRNNN NNNTEPVKSN  120
DAQRFRRKKN SPLADCKHLS AYNDLDFING YMRNQHDKGR RLVLDDGGGG DAQILLEFLM  180
RMQEENPKFF FAVDFSEDHL LRNVFWVDAK GIEDYKSFSD VVSFDTTYFV SKYKVPLVLF  240
IGVNHHVQPV LLGCGLVADD TVYTYVWLMQ SWLVAMGGQK PKVMLTDQNN AIKAAVAAVL  300
TETRHCYCLW HVLEQLPRNL DYWSMWQDTF MKKLFKCIYK SWSEEEFDRR WLKLIDKFHL  360
RDVQWMRCLY DERKFWAPTF MRGVTFAGLS TRYRSESVNS LFDRYVHIET SLKEFLEGYG  420
VMLEDRYEEE AKADFDAWHE APELKSPSPF EKQMLLVYTH EIFRKFQLEV LGAAACHLTK  480
ESEEGTTYSV KDFDDDQKYL VDWDEFKSDI YCSCRSFEYK GYLCRHAIVV LQMSGVFTIP  540
INYVLQRWTN AARNRHQISG NLELVQTNIR RFNDLCRRAI ILGEEGSLSQ ESYDIAMLAM  600
KEAFKQCAIK FNTIEHPARC EEAAIQAGDS VQGGNQYGST MTQIGLEPNN IHASNAPVQA  660
ETRREKRSSV NNTSKKSKHM TQSETTVGEA SQEAFQHVAA PRSLQAVAGQ FHNTMPGIFQ  720
NVIPTEFHNL PATNMHQNNP PG*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g047860.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221406	0.0	AK221406.1 Arabidopsis thaliana mRNA for putative phytochrome A signaling protein, complete cds, clone: RAFL25-49-E06.
GenBank	BT010456	0.0	BT010456.1 Arabidopsis thaliana far-red impaired response protein -related (At1g76320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010416546.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A178WNR6	0.0	A0A178WNR6_ARATH; FRS4
STRING	XP_010416546.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]