PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g048160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 1159aa    MW: 127207 Da    PI: 8.2391
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g048160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.33e-40140216278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cqv++C++dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Csa07g048160.1 140 CQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 216
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-33132201IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.941137214IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-37138219IPR004333Transcription factor, SBP-box
PfamPF031101.4E-28140213IPR004333Transcription factor, SBP-box
SuperFamilySSF484036.78E-89581052IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502978.8269591062IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.7E-69591051IPR020683Ankyrin repeat-containing domain
CDDcd002041.50E-69621055No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1159 aa     Download sequence    Send to blast
MDEVGPQVAA PISIHHPMGK KRDLYHHHQP HWLVPSQQPK NDWNPNLWEW DSQRFEAKQV  60
EAGAKSLRLG SSSNNHNNNN NGGLSYEGGG ERGLDLNLAS GFNDFEDTPV AVTSPPPNKK  120
VKSGSPGRGG GGGGGNYPKC QVDNCKEDLS IAKDYHRRHK VCEVHSKATK ALVGKQMQRF  180
CQQCSRFHLL SEFDEGKRSC RRRLAGHNRR RRKTQPEEIT SRVVAPGNRD NTSNNANMDV  240
LALLTALACA QGRNEAKPNG SPGVPQRGQL VQILNKINAL PLPMDLVSKL NNIGILARKN  300
PDQPSALNPQ NGMDGASSPS TMDLLAVLSS TLGSSAPEAI ALLSQGGFGN KESNEKTKLT  360
SSDHGATTNL EKRTLEFPSF GGGERTSSSN HSPSQDSDSR GQDTISSLSL QLFTSSPEDE  420
SRPTVASSTK YYSSASSNPV DDRSPSSSPV MQELFPLQTS PESRSNEKTK LTSSDHGFTT  480
NLEKRTLEFP SFGGGERTSS SNHSPSQDSD SRGQDTRSSL SLQLFTSSPE DESRPTVASS  540
TKYYSSASSN PVDDRSPSSS PVMQELFPLQ TSPESRRCNN YRNTSPSPKT SCRPLELFGA  600
SIRGPAANPN FNVSRHQSGY ASSGSDYSPP SLNSDAQDRT GKIVFKLLGK DPSQLPGTLR  660
TEIYNWLSSI PSEMESYIRP GCVILSVYVA MSASAWEQLE ENLLERVSSL VQDSDFWSNT  720
RFLISTGRQL ASYKHGRIRL SKSWRTLNSP ELITVSPLAV VAGEETALTV RGRNLTSDGM  780
SFRCAHMGNY ASMEVTGTEH KRTKFDELNV GSFKVQSASP VSLGRCFIEV ENGFRGDSFP  840
LIIANARICK ELNRLEDEFH TKDVIEEQTH NLDRPRSREE VLCFLNELGW LFQRKWTSNI  900
HGESDFSLPR FKFMLVCSVE RDYCALIRTL LDMMVERNLG EDGLMNKESL DMLAESQLLN  960
RAVKRRNTKM AETLIHYSVN PSTKNFIFLP NIAGPGGITP LHLAASTSGS DDMIDVLTND  1020
PQEIGLSCWN SLVDATGQTP FSYASMRNNH SYNSLVARKL ADKRNGQISL NIENGIDQIG  1080
LSKRLSSGLK RSCNTCASVA LKYQKRVSGS HRLFPTPIIH SMLAVATVCV CVCVFMHAFP  1140
IVRQGSHFSW GGLDYGSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29130213184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1960965RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g048160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2429580.0AJ242958.1 Arabidopsis thaliana partial mRNA for SPL1-Related3 protein (SPL1R3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083404.10.0PREDICTED: squamosa promoter-binding-like protein 16 isoform X1
SwissprotQ700C20.0SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBLD7KTV10.0D7KTV1_ARALL; Uncharacterized protein
STRINGXP_010416578.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein